Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0282 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCCGGTTGCTTAATTGTGAGAAAAAAAGATGAGGGATTGGGAGGCGCCGGTTCTTCGGGCTCACGCTTGATTAATGCGAAGAAGGAGAAGAAGAGGCCTAGGGTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGGAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGAAAAGGATGTCATGGACGAGAGTGGAAGTGTGAGAAAGAAGGATAGGCTGCAGTACGTTAAGCGGAATGATGATGGTTTGATCAACAGGATGGATGTGGATGGTTTACGGAGAAATATGGACAACTTAGATGTGTTTGAGTTCAACGAGTATGATGAAATCGATGGTGAGACTAGGCGGAGGAAGCATTTTAATGGCAGTGGAGAAAGACGGTTTCTTGGTTCCATGAACCTGCCTCAAGGTGGCATCGAGAGGGAATTTGGAACCACTTCTAGTAGGCATGCTGTGCTGGACAAGAGGAAGAATTTGTATGTAGAACAAACCAATAGCTTAGATCGGGACAGACCTCCCCGAAAGATTAATTTTGACACAGATAATGACGGAGCTCATCTTCCAATACCCTTGTTGAGAGATAAATTTAGGGGTCATTCCGATAAAGCAATCAGGGTTCAGGGGAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAGAATGTGAGTGGAGCTCCCGATATGTATGATCATCGCCCATTAGAAGAAAGTAGAAAGAGTTTAAGGACTGAAGATACTTTGAAGAGGAAGGTGTTAGTTACACCTTCAGTTTACCCAGAAACTAAGTCTCATGTGAAACAGGATCCCTTTTCTAAGCCAGAGAAGGACCATGCAGAATTTCAAACATCAGTATCAACAAAAAATGGAAAGGGTTGCAGCTGGGATTCAGGTGATAGCAGTGTATCATTGAAGCCTAAAAAAAAGGTTGAAGCTCACAAATCTGCTAAGAGAGCAAGCTCTGAAGTTGAAAAAATTCCACATGAAGAGACTCCTCCAAGCACAGCGAAGGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATCGATTACAGACCTAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCTACCGGAACAGCTTATTGGTCAATTATTAAGGCTTACGATGCCCTTCAAAAGCAATTAAATGAAGAAGGAGCAGAGGTTAAACCTAGTGCTGATGCTTCCTTTACGCCAATATCAGATGATATTCTCAGTCAATTAACCAGGAAAACTCGAAAGAAAATTGAGAAAGAATGGAAAAGTAAGCGGAGAGATGATAGTGACAGTGAAAATGCCAAAGAAGCAAGTGCACCGAGATCTGCTGGTACTAAAAATGACATTGATAGCATGGACAGTGATAGCAATGAAGAAAAATTAAGCTCCTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGAACGAGAATGGGTGTCCAAGTGTCAACTCAAAAGGTCAAAGTTCTAGTAAGTATTCACGTGATGCCACTGTAAAACCTTCTTCTGGATTCAATTCACGCATTTTGCATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAGTAGGGGATTAGATTCAGAGAACGATGGTTTTGTTCCATATACTGGTAAAAGGACTCTGCTTTCCTGGCTTATCGACTCTGGAACTGTGCAGTTGAGCCAAAAGGTCCGTTACATGAACCGCAGACAGACCCGAGTGATGCTGGAGGGGTGGATTACCAGAGACGGCATTCATTGCGGTTGCTGCAGCAAAATCCTCACTGTTTCGAAGTTTGAGATACATGCTGGAAGCAAACTACGCCAACCTTTTCAAAACATCTTTTTGGAGTCTGGAGTTTCTCTTCTGCAATGCCAGATAGATGCATGGAATAGACAGGAGGAGTCTAAACGTCTCAGTTTCCACACAGTTGAAATTGACGGTGATGATCCGAATGATGATACTTGCGGTATCTGTGGAGATGGTGGAGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGAAATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACCTGCAAGTATTGTGGAGTTGCCAGTGTTGATGTTTCTCATGGAGACAATATGGTGTCTGAGATATCAAGTTGCATGCTATGCGAGAAAAAATTTCATGAATCCTGCATTCCAGAGACGGATGCTCATTCCAATGGTTCAGTCACTTCTTTTTGTGGCAAAACTTGCAGAGAGCTTTTTGAGAATTTGCAGAAGTTTCTTGGGTTGAAACACGAATTAGATGCAGGATACTCATGGTCTCTTATCCGTAGAACAAGTGAAGATTCGGATGCATCTCTTCGTGGACATTCTCAAAGGATTGAAAGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGTTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTATCATGCATCACACTTCATCGTTTTGCATGTACATATTAACTTGATGACAAATGAATTCCAATCTAATCCAGTCAGTATAATTTTTCTGTCCATTCAAATGAAAGAACTGAAGGGGTCAGAATTTGGCACAGCCCTTTGGGCTGAGAAGAATCCTCCTTTTGGATTTATTTGCTCTGTTGGAAGAATATGGGCCTTCATCGCCAGATTTGATGCTTGCTTGGGTAGTAAGGCTCTCCGCATGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCATACATGGAATGTGATTTTTGGCTTTAGCCCTTTGGAGCAATCACTCAAACAAGAAATGAGATTGATGAATATGTTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCGAAGATACAGTTGTCGAGGAAAATGCTACTACTGGCTCAGGTGCAAAACAAACAGATTGTAGAAGCACAGAGTTTAGCAGTCCTAAGATGGATACAGAGACCTCATCTGGACATGAACCTCAAAGTTGTGATGACACTGAACAACGTCACTCCAGGGAGACAACAAATGAAGCAGCTGCCACTAACCCGAATCCTGAATCCATGCCTGATTCTCCAAATGATACTTCTGTGGCGAATAGTTCTCTGGATGCGCCTCGTGAAGTTAACACGTCTTGTTTTCCAATGGAAACCGTAAATTCAGATTCTGATTCTGGTGACAAATTAGCTAAATGTTCCTCCGACAGGAAACATTCATCTCCATCTGATGCAAGGTGTGAATCTCTTCCAACCAAAAATAGGCCTGGAATTCAGCATGGTATAGAAGACCATTCGCAGTCCGCTTCCCAATGTATGGCAGCTGATAACTCTTCAGACAGTTTTCTTGAACCTAAGGTTACAGTTTCAGATGAAGGAATAATTTGTTCCAACTCTCATGCTGGGCACAAGTTGGCTGAATCTGGTTCTGAAAATAACATACCCGTAATGGATTCTCCTGAAGATGATAAGTCTTCGAATAAGATTAATGGTCATGATTTTCGTGAAGACAATGCCCATGCTAATGCTCTACCTGCTCATTTGGTTGAAAATTTTGCCAATGGCATTGTCAGTGAAAATCCACCTGTCTCTACTGCTGGTTTGTGTGGCACTAATGGACGCCCCTTCGAGATTATATCTGATTGCAAAAATGCAATTGCTCATGGGAAAGAAGCAATTTCTGATGGAATGTGCGGCAGTGAAAGTTCTGCACAGTCATGTGGGGCAAAAGTCAGAGGTGATTCACAGGAAGAGAGAGCTGAATCTGGTTCGGTTTGA 4053 42.17 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKDEGLGGAGSSGSRLINAKKEKKRPRVVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFEKDVMDESGSVRKKDRLQYVKRNDDGLINRMDVDGLRRNMDNLDVFEFNEYDEIDGETRRRKHFNGSGERRFLGSMNLPQGGIEREFGTTSSRHAVLDKRKNLYVEQTNSLDRDRPPRKINFDTDNDGAHLPIPLLRDKFRGHSDKAIRVQGKNGVLKVMVNKKKNVSGAPDMYDHRPLEESRKSLRTEDTLKRKVLVTPSVYPETKSHVKQDPFSKPEKDHAEFQTSVSTKNGKGCSWDSGDSSVSLKPKKKVEAHKSAKRASSEVEKIPHEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEVKPSADASFTPISDDILSQLTRKTRKKIEKEWKSKRRDDSDSENAKEASAPRSAGTKNDIDSMDSDSNEEKLSSFIKQGGKSFKNKLNENGCPSVNSKGQSSSKYSRDATVKPSSGFNSRILHGRKGRKLGLLVRGSSRGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQIDAWNRQEESKRLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLEIQIPPGDWHCPNCTCKYCGVASVDVSHGDNMVSEISSCMLCEKKFHESCIPETDAHSNGSVTSFCGKTCRELFENLQKFLGLKHELDAGYSWSLIRRTSEDSDASLRGHSQRIESNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRYHASHFIVLHVHINLMTNEFQSNPVSIIFLSIQMKELKGSEFGTALWAEKNPPFGFICSVGRIWAFIARFDACLGSKALRMLKVEKLIIPAIAELMHTWNVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIEDTVVEENATTGSGAKQTDCRSTEFSSPKMDTETSSGHEPQSCDDTEQRHSRETTNEAAATNPNPESMPDSPNDTSVANSSLDAPREVNTSCFPMETVNSDSDSGDKLAKCSSDRKHSSPSDARCESLPTKNRPGIQHGIEDHSQSASQCMAADNSSDSFLEPKVTVSDEGIICSNSHAGHKLAESGSENNIPVMDSPEDDKSSNKINGHDFREDNAHANALPAHLVENFANGIVSENPPVSTAGLCGTNGRPFEIISDCKNAIAHGKEAISDGMCGSESSAQSCGAKVRGDSQEERAESGSV 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3080714 3089713 + Maker00024012 Lcy13g0282 650587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0282 1350 Pfam Tify domain binding domain 629 679 IPR032308 -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1085 1101 - -
Lcy13g0282 1350 PANTHER PHD FINGER PROTEIN 12 321 1143 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Lcy13g0282 1350 ProSitePatterns Zinc finger PHD-type signature. 707 745 IPR019786 -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 315 333 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 255 275 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1055 1196 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 291 382 - -
Lcy13g0282 1350 Pfam PHD-finger 707 745 IPR019787 -
Lcy13g0282 1350 SMART PHD_3 747 802 IPR001965 -
Lcy13g0282 1350 SMART PHD_3 706 746 IPR001965 -
Lcy13g0282 1350 CDD PHD2_CHD_II 707 745 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1242 1256 - -
Lcy13g0282 1350 SUPERFAMILY FYVE/PHD zinc finger 695 751 IPR011011 -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1154 1169 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 470 562 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 514 559 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 470 488 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 28 53 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1322 1350 - -
Lcy13g0282 1350 Pfam Domain of unknown function (DUF7028) 372 435 IPR054292 -
Lcy13g0282 1350 ProSiteProfiles Zinc finger PHD-type profile. 704 748 IPR019787 -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 257 275 - -
Lcy13g0282 1350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 804 IPR013083 -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 489 503 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1231 1256 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1102 1153 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 334 382 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 298 314 - -
Lcy13g0282 1350 MobiDBLite consensus disorder prediction 1055 1084 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0282 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0282 Lcy-Chr13:3080714 Lcy9g1345 Lcy-Chr9:38272838 3.91E-92 dispersed
Lcy13g0282 Lcy-Chr13:3080714 Lcy3g1603 Lcy-Chr3:43143662 1.16E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
Vvi7g89 . . . Bda10g00577 . . . . Cmo08g00335 Cmo17g01163 . . . . . Cpe17g00858 . . . . . . . . Cla09g00660 Cam09g0695 Cec09g0686 Cco09g0684 Clacu09g0704 . Cre09g0673 Cone17ag0558 Cone20ag0858 . . Lsi02g02282 Csa07g01711 . Cme01g02078 . . . . Bpe10g00402 . . . Sed09g1123 . . Cma08g00340 Cma17g01186 Car08g00305 Car17g01118 . Cpe12g01032 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . . . Chy01g01576 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19343 None None None None Lcy TR