Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0311 ATGAGTGCCGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGAAAATACCTAAAGGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAGTCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGACGATTCCGGCGCCGGTGCTCTCAGGAGGGTTGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACGTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCCGAACCAGACAACAAGGTCACCAGTCCCAGAGATCAATGCGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGTCATCTATGGATTCGCAGGCATGGGCAATCATGCATCTAGCAGCTAGTCCAATTCATTTCCCACAGAATCGCCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGCTACTACCTATCGAAATATGCATACAGAGAAGATGGTTGAGTACCCTCAGCAACAGCATGTAAAAGGAACCAGCACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGAGCTACATTTCTGCAGATATCCAGGAGTGCTGAGTTCGACAACGTCATTGATGGCATGCTACTTCAGAAATCATCCTTGTGA 1086 46.5 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRRVVVSPRVNSNQGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDTNGVDGQMTIFYCGKVNVYDGVPPDKSSMDSQAWAIMHLAASPIHFPQNRPLGGTAACQSPPCLLQTANERDDFFPPSATTYRNMHTEKMVEYPQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRLKNKKNTGLSSSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKGATFLQISRSAEFDNVIDGMLLQKSSL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3377511 3382501 + Maker00023404 Lcy13g0311 650616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0311 361 Pfam Jas motif 250 270 IPR018467 -
Lcy13g0311 361 Pfam tify domain 144 178 IPR010399 -
Lcy13g0311 361 SMART tify_2 138 179 IPR010399 -
Lcy13g0311 361 MobiDBLite consensus disorder prediction 230 253 - -
Lcy13g0311 361 MobiDBLite consensus disorder prediction 109 139 - -
Lcy13g0311 361 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 272 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Lcy13g0311 361 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19345 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0311 - - - 0.0