Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0311 ATGAGTGCCGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGAAAATACCTAAAGGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAGTCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGACGATTCCGGCGCCGGTGCTCTCAGGAGGGTTGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACGTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCCGAACCAGACAACAAGGTCACCAGTCCCAGAGATCAATGCGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGTCATCTATGGATTCGCAGGCATGGGCAATCATGCATCTAGCAGCTAGTCCAATTCATTTCCCACAGAATCGCCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGCTACTACCTATCGAAATATGCATACAGAGAAGATGGTTGAGTACCCTCAGCAACAGCATGTAAAAGGAACCAGCACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGAGCTACATTTCTGCAGATATCCAGGAGTGCTGAGTTCGACAACGTCATTGATGGCATGCTACTTCAGAAATCATCCTTGTGA 1086 46.5 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRRVVVSPRVNSNQGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDTNGVDGQMTIFYCGKVNVYDGVPPDKSSMDSQAWAIMHLAASPIHFPQNRPLGGTAACQSPPCLLQTANERDDFFPPSATTYRNMHTEKMVEYPQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRLKNKKNTGLSSSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKGATFLQISRSAEFDNVIDGMLLQKSSL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3377511 3382501 + Maker00023404 Lcy13g0311 650616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0311 361 Pfam Jas motif 250 270 IPR018467 -
Lcy13g0311 361 Pfam tify domain 144 178 IPR010399 -
Lcy13g0311 361 SMART tify_2 138 179 IPR010399 -
Lcy13g0311 361 MobiDBLite consensus disorder prediction 230 253 - -
Lcy13g0311 361 MobiDBLite consensus disorder prediction 109 139 - -
Lcy13g0311 361 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 272 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Lcy13g0311 361 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0311 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g0311 . 1 186 Tify Gene Family AT4G14713 51.0 1.8e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19345 None None None None Lcy TF