Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0319 ATGACACAGTCTCTGCAGCTTTTCTCCTCCTCCTCCACCCGCTCTCCGCCCATCTCTCTCCCCAAACATTCCCTCTCTAAACCCTCCCCTTCCTCCGCCGCCTTCCGCTTCCCCTTCTCCTTCACCAAATCCTCAATCAGAGCCTCTTCCTCCCCGGATCTCACTTCCCCAGTCCTCGTTTCTGCCAATGGCTCCAGTTCCGGAGCTGGGGTTGCCTCGTCTTCTGCTACTACCACGGACTTTCTGCCTGTCGCCTCTGATGCCACCTCGATTGATGTCGATGCTGTCACCGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGCACCAGGAGGACCAAGCTTATCTGTACTATTGGCCCTGCTACTTGCGGATTCGAGCAGCTTGAGGCGCTTGCTGTCGGCGGTATGAATGTTGCCAGGATCAATATGTGCCATGGGACTCGAGAGTGGCATCAGACGGTTATTGAACGCGTGCGGAGGCTCAATGAGGAGAAGGGTTATGCTGTGGCTATTATGATGGATACTGAAGGGAGTGAAATTCATATGGGTGATCTTGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATTTGGACGTTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACTATTAATGTAAACTATGAAGGGTTTGCAGAAGATGTGAGAGTGGGTGATGAACTCCTTGTTGACGGTGGAATGGTGAGGTTTGAGGTGATCGAAAAGATTGGTCCTGATGTTAAGTGCCTGTGTACTGACCCGGGATTGTTGTTGCCACGAGCTAATTTGACTTTTTGGAGGGATGGACATCTAGTACGAGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTCTTGCCATATCATTTGTCAAGTCAGCTGAAGTGATAAAACATCTTAAAAGCTATATTGCTGCACGTTCTCGTGGCAGTGACATTTCCATCATTGCAAAAATAGAGAGTCTGGACTCATTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTATGCAGGCAGTTAAATAAGCCAGTTATTGTTGCTTCTCAGCTGCTTGAGTCGATGATTGAATACCCTACACCCACCAGAGCTGAAGTTGCTGATGTTTCTGAGGCCGTTAGGCAGCGATCAGATGCTCTAATGCTCTCTGGTGAGTCCGCCATGGGCCAGTACCCCGAGAAGGCATTGGCTGTTTTGAGAAGTGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACTCCATGAACCTATGGAACTCCCAGAAGTTGGATCTTCATTCTCAGATAGTATCTTAGAAGAGATCTGCAATTCGGCTGCCAAAATGGGCTATGTCTTCTTTCCCTCACTTCTTTATGGTGCTGTTCCTGTTGCTTATTCCAGTCTAACTGTGAGTTTTGTTTCTCTAGCCAATAATTTGGAGGTGGATGCGATTTTCGTCTACACAAAGACAGGCCACATGGCATCTCTCCTGTCCCGATGCCGACCCGATTGCCCGATCTTTGCATTTACTTCCACGACATCTGTGAGGAGACGTCTTAACTTGCAATGGGGCTTGATACCCTTCCGCCTGAGCTTCTCGGATGACATGGAAAACAATCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTAATTGCTGTCTCAGACATGTTGCAGTCTATCCAAGTTATGAATGTTCCATAA 1851 47.38 MTQSLQLFSSSSTRSPPISLPKHSLSKPSPSSAAFRFPFSFTKSSIRASSSPDLTSPVLVSANGSSSGAGVASSSATTTDFLPVASDATSIDVDAVTEAELKENGFRSTRRTKLICTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHQTVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDELLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRSDALMLSGESAMGQYPEKALAVLRSVSLRIEKWWRDEKLHEPMELPEVGSSFSDSILEEICNSAAKMGYVFFPSLLYGAVPVAYSSLTVSFVSLANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3470341 3474548 + Maker00023745 Lcy13g0319 650624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0319 616 Gene3D - 497 616 IPR036918 -
Lcy13g0319 616 Gene3D - 179 283 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Lcy13g0319 616 MobiDBLite consensus disorder prediction 1 31 - -
Lcy13g0319 616 Gene3D - 112 448 IPR040442 -
Lcy13g0319 616 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 96 456 IPR015813 GO:0003824(InterPro)
Lcy13g0319 616 FunFam Pyruvate kinase 178 284 - -
Lcy13g0319 616 Pfam Pyruvate kinase, barrel domain 110 441 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 NCBIfam pyruvate kinase 110 605 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 FunFam Pyruvate kinase 285 452 - -
Lcy13g0319 616 FunFam Pyruvate kinase 453 606 - -
Lcy13g0319 616 PANTHER PYRUVATE KINASE 91 606 IPR001697 GO:0000287(InterPro)|GO:0004743(PANTHER)|GO:0004743(InterPro)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Lcy13g0319 616 SUPERFAMILY PK beta-barrel domain-like 179 270 IPR011037 -
Lcy13g0319 616 ProSitePatterns Pyruvate kinase active site signature. 332 344 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Lcy13g0319 616 PRINTS Pyruvate kinase family signature 334 360 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 PRINTS Pyruvate kinase family signature 361 385 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 PRINTS Pyruvate kinase family signature 167 183 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 PRINTS Pyruvate kinase family signature 302 316 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 PRINTS Pyruvate kinase family signature 411 429 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 PRINTS Pyruvate kinase family signature 430 446 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 PRINTS Pyruvate kinase family signature 386 410 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Lcy13g0319 616 SUPERFAMILY PK C-terminal domain-like 507 614 IPR036918 -
Lcy13g0319 616 Pfam Pyruvate kinase, alpha/beta domain 511 606 IPR015795 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0319 K00873 - - csv:101218017 1008.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0319 Lcy-Chr13:3470341 Lcy6g0430 Lcy-Chr6:4017319 6.61E-195 dispersed
Lcy13g0319 Lcy-Chr13:3470341 Lcy7g0762 Lcy-Chr7:7333289 1.37E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38