Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0324 ATGGAGCTCGGTGGTCCGCCCACCCCTCCGCCGCTCCCACCGCCGCCCACTGGCGCCACTCTCCTCGGCAAGTACCAGTTAGGTCGATTTCTCGGCCGTGGAAGCTTCGCCAAGGTGTACCAGGCTCGTTCTCTCGCCGATAACTCCGTCGTCGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCAATGGAGCCCTGCATTGTACGTGAGATCGCCGTGATGCGCCGCCTGCAGCACCATCCGAACATCCTCAAAATCCACGAAGTTATGGCGACGAAGACGAAGATCTATCTGGTCGTTGATTACGCCTCCGGCGGCGAGCTCTTCGCGAAACTCCTCCGTCGTGGCCGGCTGACGGAATCCACCGCCCGTCGCTACTTTCAACAACTCGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCGTCGCACATCGCGACATCAAGCCCCAAAATCTCCTCCTCGACGAAGACGGTAACCTAAAGGTCTCCGACTTCGGCCTCTCGGCGTTACCGGAGCAGATCAAAGACGGAATGCTCCACACGGCGTGCGGAACTCCGGCGTACACCGCGCCAGAGGTCGTTTCCCGACGTGGCTACGACGGCGCAAAAGCCGACGCATGGTCCTGCGGCGTCATACTGTTCGTTTTACTCTCCGGCCACCTCCCATTTAGCGACAACAATCTCGTGGCCATGTTCAAGAAGGTTTATCGACGAGAATACCAATTTCCCGATTCGATCTCGAAGCCGGCGAGGCATTTGATCTTCCAATTGCTCGATCCGAACCCCAACACAAGGATGAGCATCGAGGCTCTGATGCAGCATTCGTGGTACAAGAAATCATTGCGATCGAAGCCTCAAATCAGCAACAGAAGCTTGTTCGAATCATTGGGTAATTACAAATCTGATCTGGGTGTTTCTGGATTGAATGCTTTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCGGGGCTGTTTGAGACGACTGATTGTAAGAAGAAGAGGTTCACGACGGGGGTGAGCTTGGAGAAAGTGGAGGAGAGAGTTACAGAGATCGGAGGGGAATTGGGATACAGAGTGGAGAAAGGGAAGAGTGGAGCCATTGGGTTGGGGAAAGGGAGGATGATTTTAGTGGTGGAGGTTTTGGAAATAACCTCTAATCTGTTGATGGTGGAAGTCAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGGGATTTGAAAGCAAAGTTGCAGGACATTGTTGTTTCATGGCACACCAATGAGGCAATGTGA 1293 53.05 MELGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLADNSVVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMFKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSDLGVSGLNAFDIISMSSGLDLSGLFETTDCKKKRFTTGVSLEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEVLEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVVSWHTNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3526403 3527695 + Maker00024035 Lcy13g0324 650629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0324 430 FunFam Non-specific serine/threonine protein kinase 16 304 - -
Lcy13g0324 430 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0324 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0324 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Lcy13g0324 430 SUPERFAMILY Protein kinase-like (PK-like) 22 288 IPR011009 -
Lcy13g0324 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy13g0324 430 Pfam NAF domain 311 365 IPR004041 GO:0007165(InterPro)
Lcy13g0324 430 FunFam Non-specific serine/threonine protein kinase 18 110 - -
Lcy13g0324 430 Gene3D Transferase(Phosphotransferase) domain 1 17 307 - -
Lcy13g0324 430 CDD CIPK_C 312 414 - -
Lcy13g0324 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Lcy13g0324 430 Gene3D Kinase associated domain 1, KA1 308 423 - -
Lcy13g0324 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0324 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0324 Lcy-Chr13:3526403 Lcy8g1697 Lcy-Chr8:43542269 1.02E-124 dispersed
Lcy3g1710 Lcy-Chr3:44419570 Lcy13g0324 Lcy-Chr13:3526403 3.31E-13 transposed
Lcy11g1600 Lcy-Chr11:39858277 Lcy13g0324 Lcy-Chr13:3526403 9.60E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65551 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0324 K12761 - csv:101215156 807.364