Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0329 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGGCGGCGCTGACTGTCAAGAAGAAGAAGCAGCCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGTATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGAATTCTCGACCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCAACAGATGAAAATGTTATCCCTGTGGTCGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATATCTTCCAGCTTCAAATTCAAGGAGACGGGAAAGAGTATCAGGGTGGGCAAACTGATGGTGAAGCTGATGAAGATGAATCACCATTTGAATTCCGTGCGCTCGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGGTAATTTTGTTAAGTTATGGACTCCCTGTGGTACCTATATCATCTGAATTTACATATTTTATGAGATTTATGGATACCTATGCAATTGCATTTCATTTTGAGTCACCATACCTCTGTATGGCTATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTAAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGGATGATGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCTTCTCCTGTAAGTGTTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATAGGTTCAAAGATCTCAAGAGCAAGCAGAGCGAGTATTGCAACTGTAATAATTTCAGGTTGCATGTTGCAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATCGATGACACAGAAGATTATATCAATATTCAGCTTGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCAATCTATTCTTTGGTGGGTGCAATATTTGGAATGAACATTCCATACACTTGGAATGACGATCATGGATACATGTTTAAATGGGTTGTCATTGTTACTGGAGTAGCTTGCGCGCTGCTGTTCATCGCAACGATTTACTATGCTCGCTACAAAGGTTTGGTGGGGTCTTGA 1284 43.46 MARDGHVVPVDPQAALTVKKKKQPSRNWILLDCTGQGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPPSNIFQLQIQGDGKEYQGGQTDGEADEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKVILLSYGLPVVPISSEFTYFMRFMDTYAIAFHFESPYLCMAISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSVSGPAIWFPASPTIGSKISRASRASIATVIISGCMLQAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNDDHGYMFKWVVIVTGVACALLFIATIYYARYKGLVGS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3603206 3609349 + Maker00023753 Lcy13g0329 650634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0329 427 Gene3D - 14 99 - -
Lcy13g0329 427 Pfam Magnesium transporter MRS2-like 40 186 - -
Lcy13g0329 427 FunFam Magnesium transporter MRS2-1 16 99 - -
Lcy13g0329 427 Pfam CorA-like Mg2+ transporter protein 323 413 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy13g0329 427 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 424 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy13g0329 427 CDD Mrs2_Mfm1p-like 28 424 IPR039204 -
Lcy13g0329 427 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 363 414 IPR045863 -
Lcy13g0329 427 Coils Coil 235 262 - -
Lcy13g0329 427 Gene3D Magnesium transport protein CorA, transmembrane region 104 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0329 Lcy-Chr13:3603206 Lcy13g1649 Lcy-Chr13:35439573 4.30E-62 dispersed
Lcy12g0512 Lcy-Chr12:6182932 Lcy13g0329 Lcy-Chr13:3603206 9.94E-96 transposed
Lcy4g0156 Lcy-Chr4:1999049 Lcy13g0329 Lcy-Chr13:3603206 6.97E-76 transposed
Lcy6g0580 Lcy-Chr6:5498087 Lcy13g0329 Lcy-Chr13:3603206 5.22E-69 transposed
Lcy12g2154 Lcy-Chr12:42818631 Lcy13g0329 Lcy-Chr13:3603206 4.98E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0329 K16075 - csv:101203841 619.772