Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0329 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGGCGGCGCTGACTGTCAAGAAGAAGAAGCAGCCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGTATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGAATTCTCGACCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCAACAGATGAAAATGTTATCCCTGTGGTCGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATATCTTCCAGCTTCAAATTCAAGGAGACGGGAAAGAGTATCAGGGTGGGCAAACTGATGGTGAAGCTGATGAAGATGAATCACCATTTGAATTCCGTGCGCTCGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGGTAATTTTGTTAAGTTATGGACTCCCTGTGGTACCTATATCATCTGAATTTACATATTTTATGAGATTTATGGATACCTATGCAATTGCATTTCATTTTGAGTCACCATACCTCTGTATGGCTATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTAAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGGATGATGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCTTCTCCTGTAAGTGTTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATAGGTTCAAAGATCTCAAGAGCAAGCAGAGCGAGTATTGCAACTGTAATAATTTCAGGTTGCATGTTGCAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATCGATGACACAGAAGATTATATCAATATTCAGCTTGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCAATCTATTCTTTGGTGGGTGCAATATTTGGAATGAACATTCCATACACTTGGAATGACGATCATGGATACATGTTTAAATGGGTTGTCATTGTTACTGGAGTAGCTTGCGCGCTGCTGTTCATCGCAACGATTTACTATGCTCGCTACAAAGGTTTGGTGGGGTCTTGA 1284 43.46 MARDGHVVPVDPQAALTVKKKKQPSRNWILLDCTGQGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPPSNIFQLQIQGDGKEYQGGQTDGEADEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKVILLSYGLPVVPISSEFTYFMRFMDTYAIAFHFESPYLCMAISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSVSGPAIWFPASPTIGSKISRASRASIATVIISGCMLQAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNDDHGYMFKWVVIVTGVACALLFIATIYYARYKGLVGS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3603206 3609349 + Maker00023753 Lcy13g0329 650634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0329 427 Gene3D - 14 99 - -
Lcy13g0329 427 Pfam Magnesium transporter MRS2-like 40 186 - -
Lcy13g0329 427 FunFam Magnesium transporter MRS2-1 16 99 - -
Lcy13g0329 427 Pfam CorA-like Mg2+ transporter protein 323 413 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy13g0329 427 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 424 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy13g0329 427 CDD Mrs2_Mfm1p-like 28 424 IPR039204 -
Lcy13g0329 427 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 363 414 IPR045863 -
Lcy13g0329 427 Coils Coil 235 262 - -
Lcy13g0329 427 Gene3D Magnesium transport protein CorA, transmembrane region 104 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0329 K16075 - - csv:101203841 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0329 Lcy-Chr13:3603206 Lcy13g1649 Lcy-Chr13:35439573 4.30E-62 dispersed
Lcy12g0512 Lcy-Chr12:6182932 Lcy13g0329 Lcy-Chr13:3603206 9.94E-96 transposed
Lcy4g0156 Lcy-Chr4:1999049 Lcy13g0329 Lcy-Chr13:3603206 6.97E-76 transposed
Lcy6g0580 Lcy-Chr6:5498087 Lcy13g0329 Lcy-Chr13:3603206 5.22E-69 transposed
Lcy12g2154 Lcy-Chr12:42818631 Lcy13g0329 Lcy-Chr13:3603206 4.98E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G16010 85.3 1.5e-207 719.5
Lcy13g1649 . 3 401 MRS2 Gene Family AT1G16010 50.6 4.2e-106 382.5
Lcy13g0329 . 1 400 MRS2 Gene Family AT5G64560 71.6 9.4e-147 517.3
Lcy12g2154 . 1 354 MRS2 Gene Family AT5G64560 65.3 1.1e-118 424.1
Lcy4g0156 . 14 497 MRS2 Gene Family AT3G19640 63.0 1.9e-152 536.6
Lcy6g0580 . 59 560 MRS2 Gene Family AT3G58970 54.3 6.6e-128 454.9
Lcy13g1649 . 5 401 MRS2 Gene Family AT2G03620 64.9 4.3e-132 468.8
Lcy12g0512 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.4e-113 406.0
Lcy13g0329 . 1 362 MRS2 Gene Family AT5G09690 65.1 1.6e-115 413.3
Lcy12g2154 . 1 316 MRS2 Gene Family AT5G09690 61.1 1.2e-97 354.0
Lcy12g0512 . 40 383 MRS2 Gene Family AT5G09690 50.6 9.3e-79 291.2
Lcy13g0329 . 23 315 MRS2 Gene Family AT5G09720 57.8 1.2e-77 287.3
Lcy12g2154 . 33 291 MRS2 Gene Family AT5G09720 60.2 9.7e-75 277.7
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G80900 83.0 1.7e-200 696.0
Lcy13g1649 . 1 401 MRS2 Gene Family AT1G80900 51.4 8.8e-104 374.8
Lcy5g1032 . 16 466 MRS2 Gene Family AT5G22830 67.1 3.0e-155 545.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58