Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0345 ATGTGCCCCGTCAGGACTCGGAGCTTTTGTTGGGTTCATACTTTTGAGGGCTGCATCAATCTCATCCTTTATGAACGGGTTGTCAAGTCTTCTTCTCTGCTCATCTGTAATTTTAGTGAATCGGTATTTGCGGAGAAGAATCGAAGAAGCTTGAAGGAGATTGATGGATTTTCGAAGAAGGGTTTCGAAGAAGAAGCTCAATCGGTTGGAGTTTTTTTTTCGCCAAACGGCTCTGAATTATTTGTTGTAGAGAGAGTGGAAGAGTCTTTAGAAACAGATTTGCGAGGTAACTGCGTTTCAGATGATATGGCAAGTAGGTTACCTTTTCAAATTGGGCAACTGGTAGAATCACGTTGCTTTCTCATTGGTTATCGTGGTGCTTGGTTCCGATGTAAGGGTCAACCCATGATGGTTAAGGAGGTGTTATCAATTAAAGAGAAGTTGTGGAAGGAGGTCTGCTTTCATTTGGGAGTTTTGAGTAGTATGGAAATTCATAGAAAGAATATGGTTCTAATGAAAGATAAGATGATTGAAGAATGTGAGAAGACTCGTGGAATAGTCATAGGTGATGTCGTGGGAAGTGGTAACAACAGTGTGGAGAAGAGGTTGCATTCGATGACCTCTGTGTTGCCTTCTTCTGACCTTGTTTCCTCAATTTCTCTTGGTTTTCGTTGCCCACTTTTCAATAGGGAGGCGATTGATGTGGCAAACCTCCTTTATATTCTTCAAGATCAGTTTATTTATTCTGGGAGGAGGGATGTTAGAATTAAGGACATTGGCTGGAGAATGGGGAGTCTATCTTATGAATTGGAATTTATTGACTTTCCTGATGAAGAAGTAATATGGACAAAGCCATTTCAAAAACCACCTGCAGCCTTTGGTATCCCATCAACTGGGCCAAAAGGGCAGTTGATGGTGCGTCCTCAGTTTCCACAAGTATATCGTGAAAAACAATTATCTGATGTTAGTACCAATTCTCAGCTAGAGGTGACTGTCGTTGTGAATGATGTCTGGAAGGTTGGGGATTTAGTTGATTGGTGGAAGGATAACTGTTATTGGTCTGGCAAAATAATTGCCATATTGGGGGACGAGGAGGTTAAGGTTGAGCTGCTCCCCCCACCATTTGGTGAAGGATTGGCTTATCTTGCCTCCTCCAAGGATTTGCGGCCAACCTTAGACTGGTCTCCAGAATCTGGTTGGATGGTCCCTAATATAAAGGAGAATGGAAGTACTCAATGTGCTCGGGTGCTTAACAATGGAAGTGTAGACTTGAGAACCCAGAACGTAAGTCAAGGAAATGGCAGTGAAGCCCCAACGGGAAAATCAAATGCATCATTAGCTTTACAGACCGGTTCAGCGCAGCCTGCTCATGCGTCAGCAAGAAAGTTGAAGCGACTCTACAGCAGCACGACATCGAAAGAGAAACAGGAACACACACCAGAAGTACGTGTAAGTACAGTAGCCAAGAAAACAAGTACGTCGGAGTATAACTCAACTTCACCTGCTCAAGAAGGAGACGCATCAACAGAAATTCGAGGAACACGAACTGATGCACACGGATGTAGTGATGTGACTTCTGTAAAGATGGTACCCCATGTGAGTTTGAATTCCGTGCACCATGGTTCATTAGAAGATGCAATTTTGGACTTGGAAGAGCTGATAAACAGGATTAAATGGATCAAAGGCATTTTGGAGGGTGGAATTGCTCAACCAAATGCTTCAGGATCTTCATGGAAATTTGTGGAACACCGACCCTCATCTACACCAAAATGA 1773 43.09 MCPVRTRSFCWVHTFEGCINLILYERVVKSSSLLICNFSESVFAEKNRRSLKEIDGFSKKGFEEEAQSVGVFFSPNGSELFVVERVEESLETDLRGNCVSDDMASRLPFQIGQLVESRCFLIGYRGAWFRCKGQPMMVKEVLSIKEKLWKEVCFHLGVLSSMEIHRKNMVLMKDKMIEECEKTRGIVIGDVVGSGNNSVEKRLHSMTSVLPSSDLVSSISLGFRCPLFNREAIDVANLLYILQDQFIYSGRRDVRIKDIGWRMGSLSYELEFIDFPDEEVIWTKPFQKPPAAFGIPSTGPKGQLMVRPQFPQVYREKQLSDVSTNSQLEVTVVVNDVWKVGDLVDWWKDNCYWSGKIIAILGDEEVKVELLPPPFGEGLAYLASSKDLRPTLDWSPESGWMVPNIKENGSTQCARVLNNGSVDLRTQNVSQGNGSEAPTGKSNASLALQTGSAQPAHASARKLKRLYSSTTSKEKQEHTPEVRVSTVAKKTSTSEYNSTSPAQEGDASTEIRGTRTDAHGCSDVTSVKMVPHVSLNSVHHGSLEDAILDLEELINRIKWIKGILEGGIAQPNASGSSWKFVEHRPSSTPK 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3860571 3873023 + Maker00023420 Lcy13g0345 650650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0345 590 MobiDBLite consensus disorder prediction 468 511 - -
Lcy13g0345 590 MobiDBLite consensus disorder prediction 468 484 - -
Lcy13g0345 590 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 102 588 - -
Lcy13g0345 590 SMART agenet_At_2 336 396 IPR014002 -
Lcy13g0345 590 MobiDBLite consensus disorder prediction 485 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0345 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0345 Lcy-Chr13:3860571 Lcy7g1990 Lcy-Chr7:46642966 1.31E-16 dispersed
Lcy13g0345 Lcy-Chr13:3860571 Lcy4g1547 Lcy-Chr4:39087789 1.87E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g629 . Blo12g00362 Bda03g00847 . Bpe04g00801 . Bma04g00747 . Cmo08g01075 . . . . . . . . . . . . . . . Cla06g00641 Cam06g0686 Cec06g0688 Cco06g0695 Clacu06g0672 . Cre06g1431 . . . . . . Chy05g00346 . . . . . . . . . . . . Cma08g01102 . Car08g00976 . . Cpe17g00180 Bhi12g01653 . . Lac12g2204 Hepe03g0259 . Lcy13g0345 . . . . . . . Lsi09g01258 . . Cme05g00537
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010419 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 0 1 1 1 1 1 1 1 1 2 32