Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0350 ATGTTTGCCGGTCGATGGAGGTTGGCGATGACCGGTAGTCGGAGGTGGACGGTGGCGGTCGGTCGGGGGAGTTCGACGGCGGTTGGTAGTCTGAGGTCGGCGATGGTGGTCGGTCGGTGGAGGTCGACAGCGGCTGGTCGTCGGTGGTCGACGGTGGTGTTCGGTCAGTGGAGGTCGACAGCGACTGGTCATCGGAGGTCGACAGTAGCGGTCGACCGTGACCGATATTTGAAGGTCGACGATGGCGACCGGTCATCAATTCAGTCACTATTCGTGAACTTTACTTTTGAAAGAGCTGACATGAAGATGAGAACGGCTTTGTGGGGGACTTCTCTTGGACGATTTGGAGTCGTAAAACAGAGAAAAAAGAGACTTTTGAAGCTGAAACAAGTGGAGGAAAAGCGGGAATCAAACCATTGTTCGTGGGGATCGTCACGGGGACATATCGCCGTCAATGGCGTCGGAAGAGATCATGACGACGACGACGACGAACCGAAGGAAGGCGGCGTGGTGGTCGGAAACCGCCGATCGAGAGGGCGGCCACCGGGTTCTAAAAACAAACCGAAGCCTCCGATCATCGTCACGCGCGACAGCCCTCACGCGCTTCGCACGCACGTGATCGAGATCACCGGAGGAGCCGACGTCGCCGACAGCATAAACCAATTCTCTCGCCGCCGGCAACGTGGGGTTTGTGTTCTCAGCGGCAGCGGCACGGTCGCCGACGTCACTCTCCGGCAGTCCGCCGATTCCGCCGCCGTGATCCAACTTCACGGCCGGTTCGAGGTTCTGTCTCTGGCCGGTTCTTTTCTTCCCGGTCGAGCCCCGCCCGGTTCGACTGGGCTGACCGTGTACCTCGCCGGCGGGCAGGGGCAGGTGGTCGGAGGAACGGTGGTGGGCCCACTGGTGGCGGCTGGGCCTGTAATATTGATAGCTGCTACTTTTGCTAATGCAACTTATGAGAGATTACCTTTACAAGACGAGCTTGGTTATCAAGAAAGAGAGGTTTCTCCGGCCGCCGCAGGCAGCGGTGAAGTGGAGGCGCCGCCCCCACCGTATCCTCCGACGGCAGCTTCAATTTATGAGATGATGATACCAAATAATCATCATCATGGGATTGGGGGACACATGGGAATTGATGGGTATGCTTGGGCTCATGGGAGGCCATCTTGTTTAAATTGA 1179 57.68 MFAGRWRLAMTGSRRWTVAVGRGSSTAVGSLRSAMVVGRWRSTAAGRRWSTVVFGQWRSTATGHRRSTVAVDRDRYLKVDDGDRSSIQSLFVNFTFERADMKMRTALWGTSLGRFGVVKQRKKRLLKLKQVEEKRESNHCSWGSSRGHIAVNGVGRDHDDDDDEPKEGGVVVGNRRSRGRPPGSKNKPKPPIIVTRDSPHALRTHVIEITGGADVADSINQFSRRRQRGVCVLSGSGTVADVTLRQSADSAAVIQLHGRFEVLSLAGSFLPGRAPPGSTGLTVYLAGGQGQVVGGTVVGPLVAAGPVILIAATFANATYERLPLQDELGYQEREVSPAAAGSGEVEAPPPPYPPTAASIYEMMIPNNHHHGIGGHMGIDGYAWAHGRPSCLN 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3921555 3927574 - Maker00024002 Lcy13g0350 650655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0350 392 FunFam AT-hook motif nuclear-localized protein 202 329 - -
Lcy13g0350 392 ProSiteProfiles PPC domain profile profile. 199 336 IPR005175 -
Lcy13g0350 392 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 159 387 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy13g0350 392 MobiDBLite consensus disorder prediction 152 173 - -
Lcy13g0350 392 Pfam Plants and Prokaryotes Conserved (PCC) domain 203 315 IPR005175 -
Lcy13g0350 392 SUPERFAMILY AF0104/ALDC/Ptd012-like 201 331 - -
Lcy13g0350 392 MobiDBLite consensus disorder prediction 136 195 - -
Lcy13g0350 392 CDD DUF296 203 286 IPR005175 -
Lcy13g0350 392 Gene3D - 202 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0350 Lcy-Chr13:3921555 Lcy7g0904 Lcy-Chr7:9115055 1.08E-68 dispersed
Lcy13g0350 Lcy-Chr13:3921555 Lcy4g2010 Lcy-Chr4:46595440 1.18E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0350 - - - 0.0