Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0368 | ATGAATTCTTCATTCTTTCACTTCCAGAACTCCGATTTCTCGCCGGAATCTTCCCTCGGCTCCTTCGAATCTCTCCGATGGGAAGGTTTTCAAATCAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTCCACAGCTTAATCTCCGAGGCCGCCGTGTACCCACCAGAGAATTCTCTCCGGCAGGCTCCGATCAAAGATGAGGAGGTCGATTCGCTCGGAGAGGAAGACTCCCACAAGCAGAAATCCTACAGAGGAGTCCGCCAGCGGCCGTGGGGGAAATTCGCGGCGGAGATCCGGGACTCGACCCGCCACGGCGTTCGGGTCTGGCTCGGGACATTCGACAGCGCCGAGGAGGCCGCTTTGGCCTACGATCAAGCCGCTTTTTCGATGCGGGGCTCGGCGGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTAAAGGAGATGGAGATGATCAACTCCGCCGTCGGCGACGGCGACGGCGGATCTCCGGTGGTGGCTTTGAAGAGAAAACACTCGATGAGGAAGAAGTTCACGAGGAGAAAGAGCAAAGAGAGAGATGGAAATGGGAAAATGGAGAGTAATGTGGTTGTTTTGGAAGATCTTGGTCCTGATTATTTGGAAGAACTTTTGGAGTCGTCGGAGAATCTCCGGCCGTGGTGA | 687 | 54.44 | MNSSFFHFQNSDFSPESSLGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPPENSLRQAPIKDEEVDSLGEEDSHKQKSYRGVRQRPWGKFAAEIRDSTRHGVRVWLGTFDSAEEAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSAVGDGDGGSPVVALKRKHSMRKKFTRRKSKERDGNGKMESNVVVLEDLGPDYLEELLESSENLRPW | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4104615 | 4105301 | + | Maker00023340 | Lcy13g0368 | 650673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0368 | 228 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0368 | 228 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0368 | 228 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677(InterPro) | |
Lcy13g0368 | 228 | FunFam | Ethylene-responsive transcription factor 2 | 87 | 148 | - | - | |
Lcy13g0368 | 228 | PANTHER | DNA-BINDING DOMAIN | 62 | 185 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Lcy13g0368 | 228 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0368 | 228 | MobiDBLite | consensus disorder prediction | 182 | 203 | - | - | |
Lcy13g0368 | 228 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0368 | 228 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0368 | 228 | Pfam | AP2 domain | 88 | 139 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0368 | 228 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1660 | Lcy-Chr11:40455985 | Lcy13g0368 | Lcy-Chr13:4104615 | 2.93E-81 | dispersed | |
Lcy13g0368 | Lcy-Chr13:4104615 | Lcy3g1529 | Lcy-Chr3:42230866 | 1.39E-45 | dispersed | |
Lcy13g0366 | Lcy-Chr13:4075482 | Lcy13g0368 | Lcy-Chr13:4104615 | 2.74E-29 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19352 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0368 | K14516 | - | csv:101206564 | 379.022 |