Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0368 ATGAATTCTTCATTCTTTCACTTCCAGAACTCCGATTTCTCGCCGGAATCTTCCCTCGGCTCCTTCGAATCTCTCCGATGGGAAGGTTTTCAAATCAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTCCACAGCTTAATCTCCGAGGCCGCCGTGTACCCACCAGAGAATTCTCTCCGGCAGGCTCCGATCAAAGATGAGGAGGTCGATTCGCTCGGAGAGGAAGACTCCCACAAGCAGAAATCCTACAGAGGAGTCCGCCAGCGGCCGTGGGGGAAATTCGCGGCGGAGATCCGGGACTCGACCCGCCACGGCGTTCGGGTCTGGCTCGGGACATTCGACAGCGCCGAGGAGGCCGCTTTGGCCTACGATCAAGCCGCTTTTTCGATGCGGGGCTCGGCGGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTAAAGGAGATGGAGATGATCAACTCCGCCGTCGGCGACGGCGACGGCGGATCTCCGGTGGTGGCTTTGAAGAGAAAACACTCGATGAGGAAGAAGTTCACGAGGAGAAAGAGCAAAGAGAGAGATGGAAATGGGAAAATGGAGAGTAATGTGGTTGTTTTGGAAGATCTTGGTCCTGATTATTTGGAAGAACTTTTGGAGTCGTCGGAGAATCTCCGGCCGTGGTGA 687 54.44 MNSSFFHFQNSDFSPESSLGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPPENSLRQAPIKDEEVDSLGEEDSHKQKSYRGVRQRPWGKFAAEIRDSTRHGVRVWLGTFDSAEEAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSAVGDGDGGSPVVALKRKHSMRKKFTRRKSKERDGNGKMESNVVVLEDLGPDYLEELLESSENLRPW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4104615 4105301 + Maker00023340 Lcy13g0368 650673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0368 228 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0368 228 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0368 228 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Lcy13g0368 228 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Lcy13g0368 228 PANTHER DNA-BINDING DOMAIN 62 185 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy13g0368 228 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0368 228 MobiDBLite consensus disorder prediction 182 203 - -
Lcy13g0368 228 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0368 228 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0368 228 Pfam AP2 domain 88 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0368 228 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1660 Lcy-Chr11:40455985 Lcy13g0368 Lcy-Chr13:4104615 2.93E-81 dispersed
Lcy13g0368 Lcy-Chr13:4104615 Lcy3g1529 Lcy-Chr3:42230866 1.39E-45 dispersed
Lcy13g0366 Lcy-Chr13:4075482 Lcy13g0368 Lcy-Chr13:4104615 2.74E-29 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19352 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0368 K14516 - csv:101206564 379.022