Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0374 ATGAGTCAACAACTGGGTGTGCTCAGCGCACTCGATCTCGCAAAAACCCAATGGTACCATTTCACTGCAATCATCATCGCCGGAATGGGCTTCTTCACCGACGCCTACGATCTCTTCTGCATCTCAATCGTCACCAAACTCCTCGGCCGAATCTACTACCACGTCCCAAACTCCTCCAGACCCGGCTCCCTCCCTCCCAACATCGCCGCCGCCGTCAACGGCGTCGCCCTCTGCGGCACCCTCGCCGGCCAGCTCTTCTTCGGCTGGCTCGGCGACAAACTCGGCCGGAAAAAAGTCTACGGCATCACCCTCATTCTCATGGTCATCTGCTCCATCGCCTCCGGCCTCTCCTTCGGCCACTCCCCTAAAGGCGTCATCGCCACCCTCTGTTTCTTCCGATTCTGGCTCGGCTTCGGCATCGGCGGCGACTACCCTCTCTCCGCCACCATCATGTCCGAATACGCCAACAAGAAAACCCGCGGCGCCTTCATCGCCGCCGTCTTCGCAATGCAAGGCTTCGGGATTTTAGCCGGAGGAATCGTCGCCTTAATCGTCTCCGCCGCCTTCAACAACCGCTTCCCAGCGCCGCCGTACAGCACCAGCGCGGAGGGCTCCACCGTGCCGGAGGCCGATTACGTCTGGCGAATCGTCCTGATGTTCGGCGCGATTCCGGCCGGAATGACCTACTACTGGCGGATGAAGATGCCGGAGACGGCGAGGTACACCGCCCTGGTCGCCAAGAACGCAAAACAAGCGGCGGCCGACATGTCGAAAGTGCTGCAGGTCCACCTCGAAGCCGAAGAAGAGAAGATCGCAACCGAATCAGATCATCGAAACCGTTTCGGATTATTCTCTCCAGAATTCGCGAAACGCCATGGGCTCCACCTGGTGGGGACCACCACCACGTGGTTTTTACTGGACATAGCTTTCTACAGCCAGAACCTGTTCCAGAAAGACATCTTCACCGCCATCGAATGGCTTCCGCCGGCGGCGACGATGAGCGCGTTGGAAGAATGCTTCAAAATCGCGCGAGCCCAGACGTTGATCGCCCTCTGCGGCACGGTTCCGGGCTACTGGTTCACCGTCGTCTTCATCGACTACATCGGAAGATTCTTCATCCAGCTGATGGGATTCGTTATGATGACGATCTTCATGTTTGCTCTGGCGTTTCCGTACAATCACTGGAGGGAGAAGCCGCACAGAATTGGGTTCGTGGTGATGTACTCGCTGACGTTCTTCTTCGCGAACTTCGGGCCGAACTCGACGACGTTCATAGTGCCGGCGGAGATCTTCCCGGCGAGGCTGAGGTCGACTTGCCATGGAATATCGGCGGCGGCCGGGAAGGCGGGGGCGATCGTGGGGGCGTTTGGGTTTTTGTATGCGGCGCAGAGTAAGGATCCGAAGCTGACGGATCCGGGTTACCCGACTGGGATCGGAGTGAAGAATGCGTTGATTGTGTTGGGATGTATAAATTTTCTGGGAGCTCTGTTTACTCTGTTGGTGCCGGAATCGAAGGGGAAGTCGTTGGAGGAGTTGACGGGAGAGAATGAAGGAGAAGGGAATGAGGGGAATAGAACCATGCCAGTAAATGTGTGA 1596 57.46 MSQQLGVLSALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHVPNSSRPGSLPPNIAAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVICSIASGLSFGHSPKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAAFNNRFPAPPYSTSAEGSTVPEADYVWRIVLMFGAIPAGMTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVHLEAEEEKIATESDHRNRFGLFSPEFAKRHGLHLVGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPPAATMSALEECFKIARAQTLIALCGTVPGYWFTVVFIDYIGRFFIQLMGFVMMTIFMFALAFPYNHWREKPHRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPKLTDPGYPTGIGVKNALIVLGCINFLGALFTLLVPESKGKSLEELTGENEGEGNEGNRTMPVNV 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4260426 4262021 + Maker00024030 Lcy13g0374 650679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0374 531 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 511 - -
Lcy13g0374 531 CDD MFS_PhT 24 505 - -
Lcy13g0374 531 Gene3D MFS general substrate transporter like domains 271 528 IPR036259 -
Lcy13g0374 531 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Lcy13g0374 531 SUPERFAMILY MFS general substrate transporter 11 512 IPR036259 -
Lcy13g0374 531 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 506 IPR020846 GO:0022857(InterPro)
Lcy13g0374 531 NCBIfam phosphate:H+ symporter 11 515 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Lcy13g0374 531 MobiDBLite consensus disorder prediction 510 531 - -
Lcy13g0374 531 FunFam Inorganic phosphate transporter 1-6 19 527 - -
Lcy13g0374 531 Pfam Sugar (and other) transporter 25 512 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2120 Lcy-Chr12:42491286 Lcy13g0374 Lcy-Chr13:4260426 6.48E-299 dispersed
Lcy13g0374 Lcy-Chr13:4260426 Lcy9g2351 Lcy-Chr9:47815231 1.79E-178 dispersed
Lcy6g0102 Lcy-Chr6:948176 Lcy13g0374 Lcy-Chr13:4260426 3.73E-231 transposed
Lcy11g1662 Lcy-Chr11:40474248 Lcy13g0374 Lcy-Chr13:4260426 0 wgd
Lcy12g2119 Lcy-Chr12:42485577 Lcy13g0374 Lcy-Chr13:4260426 2.37E-300 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0374 K08176 - csv:101212412 932.939