Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0375 ATGGATGCTGGAAGTTCTGAATCCCCTAATATGGGTTGCAACAAGACCATAGTATGGTTTCGGAGAGACCTCAGGATTGAGGACAACCCTGCTTTAACTGCTGCTGCTAGGGATGGTTTTGTATATCCTGTATACATATGGTGCCCTAAAGAGGAGGGGCAATTCTATCCTGGTCGGGTATCAAGGTGGTGGTTGAAGCAATCCCTTGCCCATTTAAAACAGTCATTGAAATCCCTTGGTGCTGACCTTGTGCTGATGAAAACTCAGAGTACTATTTTCTCTCTTCTGGAGTGCATCCATGCTACTGGGGCAAAAAAAGTAGCATTTAACTGTCTCTACGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAAAACTAGTTGAACTCGGAATTTCTGTGCAGAGCTACAATGCAGATCTTCTATATGAGCCATGGGACGTATATGATGAAAATGGGAATGCTTTTACAACATTCAAAGAATATTGGGATAAATGTCTACTTTTGCAAAAGGAATTTTTTTCAACTCTCCCTCCATGGAAACTACAGCAGGCTTCAGGAACAGTAGGAAGTTGTTCCATTGAGGAACTAGGTCTTGAAGATGAATCAGAGAAATCTAGCAATGCATTATTAGCAAGAGCTTGGTCTCCAGGATGGAGCAACGCTGATAAGGCTCTGGCTGAATTTGTAGAAAATCATCTGCTAGAATATGCAAAAAATAGGCAACAGCTTGGTGGTAGCTCCACATCTCTACTCTCTCCATACCTACATTTTGGGGAAATAAGTGTTTGCAAGGTCTTCCAGAAAGTGAGAATGAAACAAATATTGTGGGCAAGAGAGGGAAACTTCGTAGGGGAACAAAGTTCAAATCTGTTTCTCAGGGCTATTGGGCTCAGAGAGTACTCCCGTTATATATGCTTCAACTTTCCATTCACCCATGAGAGATCGTTGCTGAGTAGCTTGAAGTTCTTTCCTTGGCATGCCAGCCAGGAAAACTTTAAGGCTTGGAGGCAGGGTCGAACTGGGTACCCATTGGTTGATGCAGGAATGAGAGAGCTTTGGGCAACTGGATGGATACATAACAGAATAAGGGTGATTGTTTCTAGCTTTGCAGTTAAAGTTTTGCTTCTTCCCTGGAAATGGGGAATGAAATATTTCTGGGACACTCTTTTAGATGCAGATTTGGAAAGTGATATTCTTGGTTGGCAATATATTTCTGGGAGTTTGCCCGATGGTCATGAGCTTGAGAGATTAGACGATCCACAGGTATGTTTAATAGTAGACTACACAGACCAAACGTACCCTTATGAACTTAAAAGTTTTCAAGATAAAATTCTGATTGTCAGCTATACAGCGTCGCGTCTCCATTCTGTAAATCTCCTGCAGGCTATTCAAGGCTCCAAATTTGATCCAGACGGAGAATATATTAGGCATTGGCTGCCTGAGCTTGCACGAATGCCAACTGAGTGGATTCATCACCCTTGGGATGCACCTCAGACTGTCCTACAAGCTTCTGGAGTTGAGTTAGGTTTAAACTATCCGACACCAATAGTTGAGTTAGATTTGGCTGTTGATCGATTGACAGAAGCCATAGTCAAAATGCGGGAAACCGAAGCAGCTGCTGGGGCAAACTCAAATGGTACAAATGAAGTTGTTATGGATAATGCAGATAGGGTTCAATGTTTAGGCACTTCTACAAATGTTGTAGCAGAGGCAAAAACTTGTGCTACTGATTCTTCTAATGATCAGAAGGTACCCACAATTCAAAATTCGAAGGTTAAAAATCCATCGAGTAGGAAGCGGTCCAAAGCCGTGGAAGAGAGAGGAGAATTTCAGTACAATATTTGCAACAACGTACAAAGTGAAGTTGGGACCTCGAAATCAGACGAAGATTTATGCTCAACTGCTGAATCTTCATCATCTAAGAAACCAACCACCAGCAGAACTTCTTTTTCTGTTCCACAGTTTTGTTCCTCATCAAAAGAGATGCCATAG 1998 42.09 MDAGSSESPNMGCNKTIVWFRRDLRIEDNPALTAAARDGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSLLECIHATGAKKVAFNCLYDPISLVRDHNIKEKLVELGISVQSYNADLLYEPWDVYDENGNAFTTFKEYWDKCLLLQKEFFSTLPPWKLQQASGTVGSCSIEELGLEDESEKSSNALLARAWSPGWSNADKALAEFVENHLLEYAKNRQQLGGSSTSLLSPYLHFGEISVCKVFQKVRMKQILWAREGNFVGEQSSNLFLRAIGLREYSRYICFNFPFTHERSLLSSLKFFPWHASQENFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPQVCLIVDYTDQTYPYELKSFQDKILIVSYTASRLHSVNLLQAIQGSKFDPDGEYIRHWLPELARMPTEWIHHPWDAPQTVLQASGVELGLNYPTPIVELDLAVDRLTEAIVKMRETEAAAGANSNGTNEVVMDNADRVQCLGTSTNVVAEAKTCATDSSNDQKVPTIQNSKVKNPSSRKRSKAVEERGEFQYNICNNVQSEVGTSKSDEDLCSTAESSSSKKPTTSRTSFSVPQFCSSSKEMP 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4267691 4273031 - Maker00023199 Lcy13g0375 650680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0375 665 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 218 536 IPR036134 -
Lcy13g0375 665 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 311 552 - -
Lcy13g0375 665 NCBIfam cryptochrome photoreceptor 15 424 IPR014134 GO:0009785(InterPro)|GO:0009882(InterPro)
Lcy13g0375 665 MobiDBLite consensus disorder prediction 577 607 - -
Lcy13g0375 665 Pfam FAD binding domain of DNA photolyase 293 531 IPR005101 -
Lcy13g0375 665 ProSitePatterns DNA photolyases class 1 signature 2. 362 381 IPR018394 -
Lcy13g0375 665 PANTHER CRYPTOCHROME 14 537 IPR002081 GO:0003677(PANTHER)|GO:0003904(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0032922(PANTHER)|GO:0043153(PANTHER)|GO:0071949(PANTHER)
Lcy13g0375 665 Gene3D - 143 303 - -
Lcy13g0375 665 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 16 186 IPR036155 -
Lcy13g0375 665 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 14 143 IPR006050 -
Lcy13g0375 665 PRINTS DNA photolyase signature 342 358 IPR002081 -
Lcy13g0375 665 PRINTS DNA photolyase signature 362 380 IPR002081 -
Lcy13g0375 665 Gene3D HUPs 17 216 IPR014729 -
Lcy13g0375 665 Pfam DNA photolyase 16 169 IPR006050 -
Lcy13g0375 665 MobiDBLite consensus disorder prediction 623 665 - -
Lcy13g0375 665 MobiDBLite consensus disorder prediction 577 596 - -
Lcy13g0375 665 ProSitePatterns DNA photolyases class 1 signature 1. 342 354 IPR018394 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0375 K12119 - - cit:102609249 911.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0375 Lcy-Chr13:4267691 Lcy9g1734 Lcy-Chr9:42530422 1.86E-240 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38