Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0378 ATGAGAGCTCTCCTCCATTTTAGAAGCTCGTCGGCGTTGGAGCTGGGGAGAAACGGCAGCATCAGAGCTCTCCTTTTGCCGATGGTCAAATCTGAAAAAGGGAGGGGAAAGGAAAACGAAAGGGAAGGGAAAGCGAAAGGGAAGGGAAAAGGGAAGGAGTGGTCGGCGGCGATTCGAGGGGTTTCTGTATCTGGATTTCCAATGGGCCAGCAACCGTCCAAAGATGAGCTCGTGTATCAGCGCGCTAGCAATGGCGATGTTGAAGGGATTAAAGCCCTCTCTGCAGAAGGTGCAGGCCTTGAGTGGGTTGATAGGGAAGGTAGGACTCCGTTGATTGTTGCCTGTACGAAACCCGAGCCTTACAACGTCGCGAAGACGTTACTAGAACTCGGCGCCAATGTCAATGCGTTTGGACCAGGCCGTAATGGTGGAACACCATTGCATCATGCAGCTAGAAGAGGCTTGGAAAACACTGTTAAATTACTTCTTTCTTACAGAGCAAATACTTCGATTATTAATGATGCTTGCCAAACTCCATTGGAAGTTGCGAGAGAAGCAGGGCACAAGAATGTTGTCCGTGCTATTGAGAATCATATTTGTCTGTTCTCTGGTTGGATGCGGGAATTTTATGGGCCAGAGTTTCTCGAAGTACTAGCTCCTCATCTCCTTACCAGGAAAGTCTGGGTAGTCGTATTACCTTGTGGTTCTCGAAATCCTGTGAAGCCTACCAAGTTGGAGCTTGCCATGTACACTGGCTTGCAGGATGCCCAACCTCGTCTAATTGTTCCATTGTGGAAATCATATTTAGAGGAACATAAGATACAGGAACCTGATCCGTCTGTTGTAATTGTCGACAACTCTCCAAACCTAGTATCAAAAGGAAGGAGGCGAAGACGGAGTTGTCATACCTCCTGGGAAGCCAGATGTCGATTTCGAAAATCAAAGACTGGACGTCTTAGACTTGCACCTGCTAATGAGTATGACAGACAACAACTCCAATGGTTTTGTGATGCTTGCAGAGGGATTCCTCAGCCAAAGGCGATGCATCCTACAGCTTGGCATAACCACCAAAACCCGGTGAACATTGCAACGGTACCACCCGGTGCAGAAGACCCAGAGCTCGCAATGGCCATAAATGCCTCTATTCAGTCAGCTGCAGAGGAAAGAGCACAGCTTCATAATCCCCACTCATCAAGTTTTGAACCAGGAGCCTCCAGTAGCAGTGTGTTACCTCCACCAGTTCCTCCAAAAACAGCTACTAGCCAATGGACAGTGCACGAGGCTAGCCACAGTTACGATCCAAGCCATCATGCCAAATCGTCGAGTGACACCGTCCCCGTCATCCAGATGACACACCCTCCAAATGCAGTCCCCACAGCTCCACCATTTGCAGCCAAACCTTTTGAGGCTGGCACAAGTTCAGTTGACTACCCATCGGTCGATTCTCATCCCGTAGACGATGTGCCATCTTCATCCGTTGAGAACGAAGGGAAATACGCCGGTAGCAACTCGTCATGTGTGATATGTTTGGATGCTCCAGTGGAGGGAGCCTGCGTCCCCTGTGGCCACATGGCTGGATGTATGTCTTGCCTAAATGAGATCAAAGCCAAGAATTGGGGCTGCCCAGTTTGTCGCACCAAGATTAATCAAGTCATAAAGTTGTATGCTGTTTGA 1674 49.04 MRALLHFRSSSALELGRNGSIRALLLPMVKSEKGRGKENEREGKAKGKGKGKEWSAAIRGVSVSGFPMGQQPSKDELVYQRASNGDVEGIKALSAEGAGLEWVDREGRTPLIVACTKPEPYNVAKTLLELGANVNAFGPGRNGGTPLHHAARRGLENTVKLLLSYRANTSIINDACQTPLEVAREAGHKNVVRAIENHICLFSGWMREFYGPEFLEVLAPHLLTRKVWVVVLPCGSRNPVKPTKLELAMYTGLQDAQPRLIVPLWKSYLEEHKIQEPDPSVVIVDNSPNLVSKGRRRRRSCHTSWEARCRFRKSKTGRLRLAPANEYDRQQLQWFCDACRGIPQPKAMHPTAWHNHQNPVNIATVPPGAEDPELAMAINASIQSAAEERAQLHNPHSSSFEPGASSSSVLPPPVPPKTATSQWTVHEASHSYDPSHHAKSSSDTVPVIQMTHPPNAVPTAPPFAAKPFEAGTSSVDYPSVDSHPVDDVPSSSVENEGKYAGSNSSCVICLDAPVEGACVPCGHMAGCMSCLNEIKAKNWGCPVCRTKINQVIKLYAV 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4316660 4321831 - Maker00023702 Lcy13g0378 650683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0378 557 SUPERFAMILY Ankyrin repeat 79 200 IPR036770 -
Lcy13g0378 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 556 IPR013083 -
Lcy13g0378 557 ProSiteProfiles Ankyrin repeat region circular profile. 106 136 - -
Lcy13g0378 557 CDD RING-HC_XBAT35-like 502 555 - -
Lcy13g0378 557 ProSiteProfiles Ankyrin repeat profile. 142 174 IPR002110 GO:0005515(InterPro)
Lcy13g0378 557 Pfam Zinc finger, C3HC4 type (RING finger) 503 551 - -
Lcy13g0378 557 PANTHER ROLLING PEBBLES, ISOFORM B 82 247 IPR050889 -
Lcy13g0378 557 Pfam Ankyrin repeat 107 136 IPR002110 GO:0005515(InterPro)
Lcy13g0378 557 ProSiteProfiles Ankyrin repeat profile. 106 139 IPR002110 GO:0005515(InterPro)
Lcy13g0378 557 SMART ANK_2a 142 171 IPR002110 GO:0005515(InterPro)
Lcy13g0378 557 SMART ANK_2a 106 136 IPR002110 GO:0005515(InterPro)
Lcy13g0378 557 ProSiteProfiles Ankyrin repeat region circular profile. 142 174 - -
Lcy13g0378 557 MobiDBLite consensus disorder prediction 387 406 - -
Lcy13g0378 557 Pfam Ankyrin repeats (3 copies) 142 195 IPR002110 GO:0005515(InterPro)
Lcy13g0378 557 ProSiteProfiles Zinc finger RING-type profile. 506 545 IPR001841 -
Lcy13g0378 557 MobiDBLite consensus disorder prediction 32 53 - -
Lcy13g0378 557 MobiDBLite consensus disorder prediction 387 443 - -
Lcy13g0378 557 SUPERFAMILY RING/U-box 500 551 - -
Lcy13g0378 557 Gene3D - 70 202 IPR036770 -
Lcy13g0378 557 SMART ring_2 506 544 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0378 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1669 Lcy-Chr11:40545692 Lcy13g0378 Lcy-Chr13:4316660 7.41E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63