Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0382 ATGGAAGCTACTAGGTGTTGGTTTAATAAGCTCAGATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCGAGAGCACCAACCAGTGAAGAGGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATTGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGGTTGGACTTACGCCATGTATTAGAAAGGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCGATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAACCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACAGAAGATGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATTGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCTGATAACTTGCTTCTTGACAAGGATGGCCATATGAAACTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAATAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCGAAACGCACGCAACAGGAACAACTACAACATTGGCAAAGGAACAGGCGAATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTTTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATATCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCAAAGGATCTAATCAGTAAACTCTTGTGCAACGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGGTACACGTGTAA 1374 41.19 MEATRCWFNKLRSKDKPKPSTNKESTGNARDASRAPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERLDLRHVLERKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVHV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4356987 4362180 + Maker00023935 Lcy13g0382 650687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0382 457 CDD STKc_NDR_like 120 455 - -
Lcy13g0382 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0382 457 SMART serkin_6 122 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0382 457 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 449 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lcy13g0382 457 MobiDBLite consensus disorder prediction 22 48 - -
Lcy13g0382 457 Gene3D Transferase(Phosphotransferase) domain 1 208 438 - -
Lcy13g0382 457 ProSiteProfiles Protein kinase domain profile. 122 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0382 457 Coils Coil 58 78 - -
Lcy13g0382 457 MobiDBLite consensus disorder prediction 1 48 - -
Lcy13g0382 457 CDD MobB_NDR_LATS-like 53 117 - -
Lcy13g0382 457 FunFam Non-specific serine/threonine protein kinase 93 205 - -
Lcy13g0382 457 Gene3D Phosphorylase Kinase; domain 1 112 207 - -
Lcy13g0382 457 FunFam Non-specific serine/threonine protein kinase 206 273 - -
Lcy13g0382 457 MobiDBLite consensus disorder prediction 7 21 - -
Lcy13g0382 457 FunFam Non-specific serine/threonine protein kinase 320 439 - -
Lcy13g0382 457 SUPERFAMILY Protein kinase-like (PK-like) 97 453 IPR011009 -
Lcy13g0382 457 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Lcy13g0382 457 Pfam Protein kinase domain 318 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0382 457 Pfam Protein kinase domain 124 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0382 457 Coils Coil 85 105 - -
Lcy13g0382 457 ProSiteProfiles AGC-kinase C-terminal domain profile. 422 457 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0382 Lcy-Chr13:4356987 Lcy3g1277 Lcy-Chr3:38645228 1.01E-264 dispersed
Lcy3g0461 Lcy-Chr3:16070387 Lcy13g0382 Lcy-Chr13:4356987 4.67E-07 dispersed
Lcy13g0382 Lcy-Chr13:4356987 Lcy2g0938 Lcy-Chr2:8673721 1.00E-214 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65553 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0382 K08790 - csv:101205120 893.264