Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0382 | ATGGAAGCTACTAGGTGTTGGTTTAATAAGCTCAGATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCGAGAGCACCAACCAGTGAAGAGGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATTGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGGTTGGACTTACGCCATGTATTAGAAAGGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCGATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAACCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACAGAAGATGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATTGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCTGATAACTTGCTTCTTGACAAGGATGGCCATATGAAACTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAATAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCGAAACGCACGCAACAGGAACAACTACAACATTGGCAAAGGAACAGGCGAATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTTTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATATCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCAAAGGATCTAATCAGTAAACTCTTGTGCAACGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGGTACACGTGTAA | 1374 | 41.19 | MEATRCWFNKLRSKDKPKPSTNKESTGNARDASRAPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERLDLRHVLERKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVHV | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4356987 | 4362180 | + | Maker00023935 | Lcy13g0382 | 650687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0382 | 457 | CDD | STKc_NDR_like | 120 | 455 | - | - | |
Lcy13g0382 | 457 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 241 | 253 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy13g0382 | 457 | SMART | serkin_6 | 122 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g0382 | 457 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 30 | 449 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Lcy13g0382 | 457 | MobiDBLite | consensus disorder prediction | 22 | 48 | - | - | |
Lcy13g0382 | 457 | Gene3D | Transferase(Phosphotransferase) domain 1 | 208 | 438 | - | - | |
Lcy13g0382 | 457 | ProSiteProfiles | Protein kinase domain profile. | 122 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g0382 | 457 | Coils | Coil | 58 | 78 | - | - | |
Lcy13g0382 | 457 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Lcy13g0382 | 457 | CDD | MobB_NDR_LATS-like | 53 | 117 | - | - | |
Lcy13g0382 | 457 | FunFam | Non-specific serine/threonine protein kinase | 93 | 205 | - | - | |
Lcy13g0382 | 457 | Gene3D | Phosphorylase Kinase; domain 1 | 112 | 207 | - | - | |
Lcy13g0382 | 457 | FunFam | Non-specific serine/threonine protein kinase | 206 | 273 | - | - | |
Lcy13g0382 | 457 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
Lcy13g0382 | 457 | FunFam | Non-specific serine/threonine protein kinase | 320 | 439 | - | - | |
Lcy13g0382 | 457 | SUPERFAMILY | Protein kinase-like (PK-like) | 97 | 453 | IPR011009 | - | |
Lcy13g0382 | 457 | ProSitePatterns | Protein kinases ATP-binding region signature. | 128 | 151 | IPR017441 | GO:0005524(InterPro) | |
Lcy13g0382 | 457 | Pfam | Protein kinase domain | 318 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g0382 | 457 | Pfam | Protein kinase domain | 124 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g0382 | 457 | Coils | Coil | 85 | 105 | - | - | |
Lcy13g0382 | 457 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 422 | 457 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0382 | Lcy-Chr13:4356987 | Lcy3g1277 | Lcy-Chr3:38645228 | 1.01E-264 | dispersed | |
Lcy3g0461 | Lcy-Chr3:16070387 | Lcy13g0382 | Lcy-Chr13:4356987 | 4.67E-07 | dispersed | |
Lcy13g0382 | Lcy-Chr13:4356987 | Lcy2g0938 | Lcy-Chr2:8673721 | 1.00E-214 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65553 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0382 | K08790 | - | csv:101205120 | 893.264 |