Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0386 ATGAAGTCCTCGACTAGGCTTGATTCGGCTACTTTTCAGCTCACGCCTACTCGAACCAGTAGCTCTGATGAACTTCTCTGTTTCAAGCGATCTGCTATTATGCCGCGTTCAGTTTTAGAAGCCAATTCGTGTGATTTGATTATATCTGCAAATGGAAAGTCTGAGAAGATAGCTTCGGGTTTATTGAATCCTTTTCTTGCCCATTTGAAGATTGCACAAGAGCAGATGGCCAGAGGTGGTTATTCCATTATTCTTGAGCCAGACCCTCGCAGTGATAGAACATGGTTCACGAAGGGTACCATGGAGAGGTTTGTCCGATTTGTAAGCACCCCTGAAATATTGGAACGGGTGTACACTATTGAATCAGAGATCTTACAGATTGAGGAGGCAATTGTGATTCAGGGAAACAATGACATGGGGCCAAATGTTGTAGATGACAAGCAAGGAAAGCCTACAAAGCCTACAGAAAGCACCACCGAAGCAAGCAAGTCTCTTCAGGATAGTAATGAGGAGAAAGCAATTGTTTTATACAAGCCTGATTCGAATTCACTGGAGGCCAATGGACATACAATGTCAGAGGAGAACTCAAAAGCTCAGCTTCTGAAAGTCCTGGAGACACGCAAAACTATGCTGCAAAAGGAGCAAGGGATGGCTTTTGCTCGTGCTGTTGCTGCTGGTTTTGACATTGATCAGATGTCACCATTGATATCATTTGCCAACAGCTTTGGAGCCTCAAGATTGATGGATGCATGTGTAAAATTCAAAGAATTATGGAAAAGAAAGCATGAAAGTGGCCAATGGCTCGAAATTGAAGCAGCAGAAGCACTATCCAACCGGCCAGACTTCTCCCCTTCCATGAGTACATCAGGCATTATACTTACAAGTATGACTGACAAGCAGACAGAATCTAGAGAAGCATGGTCTGAATCTCAAAATGAACCATCTTCAACAAATAAGGGGAATGCAAGTGCAGATGGAAATCCACCTATGATATACCAGTCACCACCAGGCCACCAAGAGTATCTTCAAGGGCAGTATCCTCCTCATATGTTCCCTCCCTGGCCCATCAATTCTCCTCCAGGTGCATTACCTGTCTTTCAAGGATATCCCATGCAAGGAATGCCTTACTATCAGAACTATGCAGGAAGTAGCCCTTTCTTTCATCCACATTATCCAGTAACAGATGATTCTAGGCTTGGTAGTGGTAAAAAAGTGGGAGGCAAAAGGCATTCCATGGATAGTGGAGATAACTCCACTGAACCAGAAACCTGGGAGACAAATGCTTCAAAAACTAGAATACCTGATGACGGGGAATCGGAGCAAGGAGATTCAGAAGATCAGAGAAAAGCTGGTCGATCAGGTAAAAAGAAATCAGGTGTGGTTGTCATCCGCAACATCAACTACATTGCATCAAAGAGGGATAACTCATCAGGCAGTGAAACGGATTCACCATCTGAAAGTGAAAGTGAAGATGGAGATTCACAGGTTATTAGTCCAGAAATTAAACACAAGAAATCTAATAGATCCTCAAGGAGCAAAGGAAAGCATCTAAATTTTGGGGATCAATCAAACATTCCTGCAAAAACTATTTCACCAGAAGCTGAAGGACACTGGCAAGCATTCCAAAACCTTTTACTTCGAGATGCCAATGAAGACAAACGTCATTCTGATCAAAGCCTATTCACCATGGAAAGGGGAACCAAGCAGAAAGGGCGACAAAATAAAGTTGGTGATGATCCATTAATTGCTCAAGGATGGAACAGAGATGAAATCCAAGAAAATGGTGCTCCAGGCATTGATAGAGTTGGTGGAAGAATCAACCGCGTGTCAAGGGCATCAAATGATGAATTATTAACTTCCAGAAGAGATGGTCTATCTGGGGATGGTCATTTGAATGTGCAGGCTACAGAACTAGATGGAGGAAGAAGTGGTTACAGGAGGCCTGGTAGTGATGATTTTATGGTTTATGGACAAAAAGGTCAAACTCACTCTAACGCCCACTTGGATCCATTAACTATAAATGGCTTTGATAATACAAAAAAGAGCTATGATAAAAGTTCTACAAATAATTTAGATGGTGATTCTTACATAGTTCCATTGAGATCGATATCAATGGATGCAGTTGGAAAGGAAGGTAGAAGTGCTGTTGACATGGATTCTGAGTTTCCATCTTCAAATCATAAGGCGGAAAACTTGTCCAATAGAGTTACTACCTATGAGCCAGATGTACTGAATCTGATGCCAAAGCGTGAAACAGAAAATGAACCTGCTGGTTATGATCCTGCTTTAGAATATGAAATGCAGGTCCATGCTGGACATGTACCAGCGTTGGATAAAAAGAAGGAAGTGGCAACTGATGTTAAACAAGGGACTAAAAGGATGGACAAGGATCGGAAGCCAAAAATTACTCCAGATAGAAAAACTGGGGGGCCAATAAGGAAGGGAAAACCTTCTAAATTGAGTCCTTTGGATGAAGCAAGAGCACGTGCTGAAAAGCTAAGAACTTATAAAGCTGATCTCCAGAAATTGAAGAAGGAGAAGGAGGAGGAAGCAATAAAAAGGATAGAAACTTTGAAGCTAGAGAGGCAGAAGAGAATTGCAGCAAGGGGTAATAGCAACACTGCTCAGTCATCATTGCCCTCTCAGCAAACTAGAAAGCTACTGCCAACGAAAATGTCACCCAACTCTCAGAAAGGATCAAAATTTAGTGATTCAGATCCAGGACCATCATCTCCTCTGCAAAGGTTCCCCATTAGAACGACTTCAATTGGTTCCAATGATTCGAACAAGGCCGCAAAACCCAGCAGGTTGAATGGTGCGAATCACTCAGCTGTTAACCGGTTAAGTCAATCTGTACCTTCATTAGCTAAGCTAAAGAAAGAGAACAGTGATGCTTCAAATGACAAAAAAGTATCCATGGCTCGTATTAGAAGATTATCGGAGCCAAAAATGAGTGTCAGCAATCATGCTTCTTCTATCAAGACACGGAGCACGGAGCCTGCTCTAAAGGCAAAAGGAACTAATGAGACTGAGAACAAAAAAAAGATATCTAATGAGACTGAGAGCAAAAAAAAGATATCTAATGAGACTGAGAGCAAAAAGAAGATATCTGCTATATTGAATTTGGATAAGAGCAAGGCTGCAACTCTTCCGGAACTTAAAATTAGAACCCCGAAGGGACCTGGTGCTACAATTGGCGACTCAATAGCAAAAGAAATAACGCAGAGTGTGAATTGTTCTTCAGTTTCTGGAGGTGCTTGTGCTTCCATGGAAAGAAACACTGCCAAAGTCTCTCATCATAATGAACTGGATGACAACCCTGTTGTTGAGAAGACTGTTGTAATGCTCGAGCGCGAGAAGCCCTCCATCCGTACAGGTCCTGCTTCTGAAGACAATCTTTGCGATCGAAAGACATACACCAAGCATAAAATTGAGGGAAAAACTGATGCCCCATCAGAATTTTCTGCCACCAGTGCTCTCAGTTCCCAAATTAAAGTGTCCGGTGTCAGTAGAGAACCCATCAAGCACCACTCACAGGGTCAGTTGAGTTCTCATGAGGTGACAGCGTATGGTGCAGATCAGGAAGCACAAAAGTTCTCATCTCCTAGTACGAGTGAAAGATTATATAAAGCTCCACATGCTCGTGTTTCTTCTTTTGAAGATCCTTGCACACGTGTTTCAGAGTATGGAAAAGCAACCCCATCAGATTTGGAGAGTGCAGCATCGGGCACCGATACTGCTAAAGCTTATGTTCCTGATTATGGAAACTCACAATTGGAAAAGATTCCTGAAGCATTGGAGAAGCCTGAGGTAAAAAAATCATCAAAAGGACTTCGACTATTACTGAAGTTTGGAAGAAAGAATCAAAGCCCAGCTACAGATGAGCATAATGATGAATCAGATAATGTCAGTGCAAATGGTTCTGAAGCTAATGATGCTGGGATCAATACCACTTCTCACAATGAAGTTCCTACACTGAAAAATCTGATTTCTCAAGACGAAACCCCCACTGCCAGCAAAACTCAGAAGTGA 4032 42.26 MKSSTRLDSATFQLTPTRTSSSDELLCFKRSAIMPRSVLEANSCDLIISANGKSEKIASGLLNPFLAHLKIAQEQMARGGYSIILEPDPRSDRTWFTKGTMERFVRFVSTPEILERVYTIESEILQIEEAIVIQGNNDMGPNVVDDKQGKPTKPTESTTEASKSLQDSNEEKAIVLYKPDSNSLEANGHTMSEENSKAQLLKVLETRKTMLQKEQGMAFARAVAAGFDIDQMSPLISFANSFGASRLMDACVKFKELWKRKHESGQWLEIEAAEALSNRPDFSPSMSTSGIILTSMTDKQTESREAWSESQNEPSSTNKGNASADGNPPMIYQSPPGHQEYLQGQYPPHMFPPWPINSPPGALPVFQGYPMQGMPYYQNYAGSSPFFHPHYPVTDDSRLGSGKKVGGKRHSMDSGDNSTEPETWETNASKTRIPDDGESEQGDSEDQRKAGRSGKKKSGVVVIRNINYIASKRDNSSGSETDSPSESESEDGDSQVISPEIKHKKSNRSSRSKGKHLNFGDQSNIPAKTISPEAEGHWQAFQNLLLRDANEDKRHSDQSLFTMERGTKQKGRQNKVGDDPLIAQGWNRDEIQENGAPGIDRVGGRINRVSRASNDELLTSRRDGLSGDGHLNVQATELDGGRSGYRRPGSDDFMVYGQKGQTHSNAHLDPLTINGFDNTKKSYDKSSTNNLDGDSYIVPLRSISMDAVGKEGRSAVDMDSEFPSSNHKAENLSNRVTTYEPDVLNLMPKRETENEPAGYDPALEYEMQVHAGHVPALDKKKEVATDVKQGTKRMDKDRKPKITPDRKTGGPIRKGKPSKLSPLDEARARAEKLRTYKADLQKLKKEKEEEAIKRIETLKLERQKRIAARGNSNTAQSSLPSQQTRKLLPTKMSPNSQKGSKFSDSDPGPSSPLQRFPIRTTSIGSNDSNKAAKPSRLNGANHSAVNRLSQSVPSLAKLKKENSDASNDKKVSMARIRRLSEPKMSVSNHASSIKTRSTEPALKAKGTNETENKKKISNETESKKKISNETESKKKISAILNLDKSKAATLPELKIRTPKGPGATIGDSIAKEITQSVNCSSVSGGACASMERNTAKVSHHNELDDNPVVEKTVVMLEREKPSIRTGPASEDNLCDRKTYTKHKIEGKTDAPSEFSATSALSSQIKVSGVSREPIKHHSQGQLSSHEVTAYGADQEAQKFSSPSTSERLYKAPHARVSSFEDPCTRVSEYGKATPSDLESAASGTDTAKAYVPDYGNSQLEKIPEALEKPEVKKSSKGLRLLLKFGRKNQSPATDEHNDESDNVSANGSEANDAGINTTSHNEVPTLKNLISQDETPTASKTQK 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4404331 4413933 + Maker00023302 Lcy13g0386 650691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 984 1005 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 781 828 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 392 528 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 856 1032 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 429 453 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 961 977 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 1176 1207 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 295 328 - -
Lcy13g0386 1343 Coils Coil 823 853 - -
Lcy13g0386 1343 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1340 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 138 167 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 295 346 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 552 657 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 401 416 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 1006 1032 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 1303 1343 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 1176 1252 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 469 483 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 716 737 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 867 957 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 1282 1343 - -
Lcy13g0386 1343 MobiDBLite consensus disorder prediction 719 737 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0386 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0386 Lcy-Chr13:4404331 Lcy9g1280 Lcy-Chr9:37492026 6.57E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49