Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0389 ATGGCTCCAACTCCGTCGTCGAAATCAAATCAAGGTCACATGAGCCAATTGAGAACTCCTCAAGCGAAGCGGCTCAATTTCAATACCCCTAGGCCACATTCATCCCCTTTTCCCAATTCCGCCATTAAAGACTCCCAATCGGAGCATCCGGTAGAAGTAATCGGCCGGATCCGAGACTATCCAGACCGGAAAGATAAGCCGGTTTCGATTCTGCAGATCAATCCCGACGGCCAGAACGTCCGTGTTCGGGCCGATTTCGGGTACCGCGATTTCAGCCTCGATGGGATTTCTCTGTCGGAAGAAGAAGATCTCGACACGTTTTACAAGAAGTTCGTCGGAGCGAGGATTCACGGCGTTAAGTTGGGGGAGAAATGTACGATTATGATGTACGGACCCACCGGCGCCGGCAAGAGCCACACGATGTTTGGCTGCGCGAAGCAGCCGGGGATTGTGTATCGGTCGCTGAAGGATATTTTGGGCGACGGCGAAAATGAAGCCGCCGCTGGGATGTTTGTTCAAGTTACGGTGCTGGAGATTTATAATGAAGAGATATATGATCTTCTTTCGAGTAATTCTGGTGGAGGGCTAGGGCTTGGCTGGCCTAAGGGCAGTGCCTCTAAGGTGAAGCTTGAAGTGATGGGGAAGAAGGCAAAGAATGCTACTTATCTATCTGGGAATGAAGCAGGAAAGATTTCCAAAGAGATTCAGAAAGTGGAGAAAAGAAGGATTGTTAAAAGTACACTCTGTAATGAGAGAAGTTCCAGAAGCCATTGCATGATAATCCTTGACGTGCCGATGGTCGGTGGGCGTCTAATGCTCGTAGACATGGCTGGTTCTGAAAATATAGAGCAAGCTGGGCAAGTTGGATTTGAGGCTAAAATGCAGACAGCAAAGATTAATCAAGGTAACATTGCACTGAAAAGAGTAGTTGAATCAATTGCCAATGGTGATTCTCATGTGCCTTTTAGAGACAGTAAATTGACTATGCTTCTGCAGGATTCTTTTGAGGATGATAAATCCAAAATTCTGATGATTCTGTGTGCCAGTCCTGATCCAAAGGAATTACACAAGACAATCTCTACTCTCGAATATGGAGCGAAAGCCAAATGCATTGTTCGCGGTCCACATACGCCAACGAAGGATAAATGTGGCGGTGATGATTCTGCTTCTTCTGTTATTCTGGGATCAAGAATTGCAGCCATGGACGATTTCATCTTCAAGTTACAAAAGGAGAACAAACTCAGAGAGAAAGAGCGAAATGAGGCACATAGAGAGCTCATGAAGAAAGAAGAAGAGGTAGCAGAATTGAGAGCCAAGCTTGAGCAAGCGGGGCCGAGAGGATCTGGGGCGAGTGAGGAAGAGATCAATTCAAAGGTGAATGAGAGAACCCAACTTCTGAAACTTGAGTTGGAGAGGAAGCTGGAGGAGTGCCAGAGAATGGCCAATGAATTTGTTGAATTGGAAAGGAGAAGGATGGAAGAGAGGATACTGCAGCAGCAACAAGAAGTCGAAATGTTGAGACGACGTCTGGAAGAGATCGAATCCGAGCTATTGAATTCAAGGGATGCAACAAGCAGCAATGATGTAAACAGATCAAGGGACATGGATGGCTGCAGGCTTGCCAAAAGGCTCTTAGGAGTGTATGCTAGTGCAGATGCAGGGATGGTGAAGTCCATGGACTTGGACATGGACGATCAAGAACCGATTCGCGAAGTGAAACTCGTCGGCGGTGTGAATTATCAACCGACTTCGAACAATGGTGGTATCGAAAGCCTGCTAGATAAAGTGAACGAGACAGTCGATCATGACGTGTTTTCGTCGCGGTTCGGGGACGGGGATAGAGTATGCTTGAGTACCGTGTTCGAGGAAGAAGAAGCAGAGGAGGAAGAGGAGAAGGAAGTTATAGAAGAAAAGAGAGTAGTGAGTACAGTTGATGGACTCGCTGAACTGACACCAAATGTTGTGAACAGAAGTCAGAACAAAGATGATTTTTTCAAGGATAGATCAGAGATTGGCATTGGATTGATAAACGACAACGAATACTCCAAGGACACAGCATTCTCGAGAAAATTGAGGATTCAAAACATATTTACTCTTTGTGGAAACCAGAGAGAGCTTTCTCAACAAATTGCCCCAATGCCTGAGAAGAAGAGATCTGATGATGCTGAAAATCAGCACTTATCTCCATTGAAGACAAAGCCTGCACCAGATCATTACAGTCAAATACTGTCCGACCTGACGAACCAAAATGGATCAACATTGACAGAAAATGAAGAGACAATGCAGCCTATAAAGCTAGCAGTAAAGGGAGGAGTAAACAGCCCAGGTGTTGTACCATTGAGTCCAATTCCATTGTGCTCAAAGGAGAACAAGCTACCCGTCACACCGAACGTCGTATCGCCGCAAAGCGATGGGCTATCGCCGAGGCTCGGCGCCACGCCGTTCATCACAGTAAGAAGACACTGA 2466 46.43 MAPTPSSKSNQGHMSQLRTPQAKRLNFNTPRPHSSPFPNSAIKDSQSEHPVEVIGRIRDYPDRKDKPVSILQINPDGQNVRVRADFGYRDFSLDGISLSEEEDLDTFYKKFVGARIHGVKLGEKCTIMMYGPTGAGKSHTMFGCAKQPGIVYRSLKDILGDGENEAAAGMFVQVTVLEIYNEEIYDLLSSNSGGGLGLGWPKGSASKVKLEVMGKKAKNATYLSGNEAGKISKEIQKVEKRRIVKSTLCNERSSRSHCMIILDVPMVGGRLMLVDMAGSENIEQAGQVGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKELHKTISTLEYGAKAKCIVRGPHTPTKDKCGGDDSASSVILGSRIAAMDDFIFKLQKENKLREKERNEAHRELMKKEEEVAELRAKLEQAGPRGSGASEEEINSKVNERTQLLKLELERKLEECQRMANEFVELERRRMEERILQQQQEVEMLRRRLEEIESELLNSRDATSSNDVNRSRDMDGCRLAKRLLGVYASADAGMVKSMDLDMDDQEPIREVKLVGGVNYQPTSNNGGIESLLDKVNETVDHDVFSSRFGDGDRVCLSTVFEEEEAEEEEEKEVIEEKRVVSTVDGLAELTPNVVNRSQNKDDFFKDRSEIGIGLINDNEYSKDTAFSRKLRIQNIFTLCGNQRELSQQIAPMPEKKRSDDAENQHLSPLKTKPAPDHYSQILSDLTNQNGSTLTENEETMQPIKLAVKGGVNSPGVVPLSPIPLCSKENKLPVTPNVVSPQSDGLSPRLGATPFITVRRH 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4426591 4430264 - Maker00023919 Lcy13g0389 650694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0389 821 Pfam Kinesin motor domain 87 371 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy13g0389 821 MobiDBLite consensus disorder prediction 708 737 - -
Lcy13g0389 821 ProSiteProfiles Kinesin motor domain profile. 50 371 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy13g0389 821 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 33 376 - -
Lcy13g0389 821 MobiDBLite consensus disorder prediction 1 46 - -
Lcy13g0389 821 PANTHER KINESIN-RELATED 51 724 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005871(PANTHER)|GO:0005874(PANTHER)|GO:0007018(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0016887(PANTHER)
Lcy13g0389 821 Coils Coil 460 523 - -
Lcy13g0389 821 SMART kinesin_4 48 379 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy13g0389 821 Coils Coil 412 443 - -
Lcy13g0389 821 MobiDBLite consensus disorder prediction 1 49 - -
Lcy13g0389 821 Gene3D Kinesin motor domain 33 374 IPR036961 -
Lcy13g0389 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 378 IPR027417 -
Lcy13g0389 821 Coils Coil 618 638 - -
Lcy13g0389 821 PRINTS Kinesin heavy chain signature 320 341 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy13g0389 821 PRINTS Kinesin heavy chain signature 122 143 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy13g0389 821 PRINTS Kinesin heavy chain signature 270 288 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy13g0389 821 PRINTS Kinesin heavy chain signature 247 264 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0389 Lcy-Chr13:4426591 Lcy1g1423 Lcy-Chr1:13783792 3.15E-31 dispersed
Lcy12g1649 Lcy-Chr12:36857745 Lcy13g0389 Lcy-Chr13:4426591 6.47E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g735 . . . . . Bpe14g01265 . . Cmo08g01050 Cmo17g00152 . . . . . . . . . . . . . . . . . . . . . Cone14ag0161 Cone15ag0172 . Cone4ag0340 . Csa02g01048 . . Blo02g00696 . . Bda13g00053 . . . . Sed09g0662 . . Cma08g01075 Cma17g00153 Car08g00947 Car17g00135 Cpe12g00130 Cpe17g00203 Bhi12g01600 Tan06g2394 Cmetu05g0124 . . . Lcy13g0389 . . . . . . . . . . Cme05g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39