Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0392 ATGAGCACATATAGTTGCTCAAAACAATACAGTAGAAGGAGTGTTAAGCAGACCCTGTATAACTCTAATGATGAAAGTGCAGCTCGGACTAGGCCATTCAGCTTTGAAGAGATTATGCTTAGAAGGAAGAATAAAGAGTCAGCTGCTAATGTTGAAGGGGGTGCCACAGGTAGCCATTCAAGAAGGGAAAGCATAGATAAGCACATTACTGATAATCGTGAATCTGAAAGACATTTTCGTCACAGTAGAGGTTCTTCTCTTGATGTGCAAAATCCCTCATTGGAGGAATCAGCCAAGATTAGTTCAAGAAGGAAAAAAGAAGAGACATTGTTGAAGGACAATATGGTGGTTAGGAGTGATAGAAATAATTATGAATCGGGATTGACATTGATGGGTAAGCTGAAATATGACGCAAATGGAAAGGATAGAAGACAGAAATATGGCCAGGAAAACCTTGGTTGGGGAAAAAATGATCAGCGATCAAGGATGGATATTGAAAATGAAACTGGAAAGAGACATTCAAGAGATACAGCTAGCAAGGATAGACGTGAAGATCGTGGTAAGGGGAAATTTGAAAGAGAAAGTAAGAGAAAATATCAAAATGGTGATGATGACAGGAACAGAGACAGATACATTGCAAAGAGACATGATCATGGTAAACATCATGACCTAGAAAATAGACAAAAAAAGGAAGCTAAAATATCATTAAGTTCACATTATGAAGATTCTAGATTGAAAAGAAGACGGAAAAGAAGCCAAGATCGTGAAAGTAAACATAAAAGATCTGGTTCACTTTCTCCAAGGCCACCCAAGCACTCAACTAAATTAGTGAGGCAGAAGGAGTTGCCATTAGATTCTCATGTAAAGAAGTCTGGAAGATGGCGTTCTGATAGTGATAGAACAGGGGATTTCACCAACAGTTCCAGTAGCCAATACAGGCGACATTCTGGGTCAACGAGTGGGCTTGGTGGCTATTCACCTAGAAAGAGAAGAACTGAATCTGCTATCAAGACTCCTTCACCTGTTCGATCACCAGAGAAGAAAAATGAAGCGTTGGATCTTCTTCCAGCAGAAAAGGTTGGATTGTTTTCTGGTTCAGTTACTTCCAACTTTCAGCCGTCAAATCCTACAGTTTTGTTGGGCATTAGTAATGATCAGTCCGGTGGTGCACTCTTTTCTCCAGCTATGGGGAAATCTGTATCAGGGGTTTCTTCAAATAATCTAGCGATGAAGACAAATGCTTCTCTTGATTTGATTCAGCTGACACAAGCCACCCGGCCAATGAGGAGGCTTTATATTGAAAACATACCACATTCTGCATCTGAGAAAGAAATCATTGACTGCCTGAATGGTTTTCTTACATCTTCAGGTGTTAATCACATCGAAGGAACCCAACCATGTATTAGCTGTATTATACACAAAGATAGAGGGCAAGCTCTTGTTGAATTTCTTACGCCTGAGGATGCTTCAGCAGCTCTTGCATTTGATGGAAGTGACTTCTCTGGCTCCATTCTGAGGATTCGGCGACCAAAAGATTATGTTGAGATTATAAGAGATCCCTACATACGGGATTGTTGTCTTTGTAGTGGTATCACTATTGAAATAGGGGAATTCATCAAAGCGCATGGATCAATTGTGGATGTTCCTACAATAAAGGATATACTTGGACAAACTGGTGACCTGGACAAGTCAGTGGCAGTAGTAAATAAAATCAGTGATGTCGTCGAGGACTCGCCAAATAAGATTATCATTGCTGGGATCTCAAATAGAATATCATCTGAAATGCTTAAGGATATTGTTACTGCATTTGGACCTTTGAAGGCCTATCACTTTGAGATCAACAGCGATCTTAATGAACCTTGTGCCTTTTTGGAGTATGTTGACCAATCGGTTATGCCCAAAGCTTGTGCTGGTCTAAATGATGTTCTCCCTGTACTATCTGAGTCAGATATTGACGAAGTTCTTGAAGACATTCGATTTGAATGTGCCAGGTTTGGGATGGTTAAATCCATGAATGTTGCAAAGCCATGCCGTGGCTGTGTCAGTGCTGAAGAAGACTACAAGAGTGATGTGACTGGTGTGGAGATCAAACATGAGATTCAGGAAAACAGCACATTAGTGATTTCAAAAAATGATAATGACCTTGAAGATAATAAAGCCAACCTTGATAATTGCCCCGATGACACTTCTCAGAAGCAAGGTAATTGCCCTGGCAATGGTAGACACCAAAACGAAGTTGTGGAGGACAAATTGTGTCAAATGGGTAATGATGATGCTATTTGTTTTGAAGACGTGGCTTGTGAGCAGGGGAGCAGCCCAGTAAATGAACTTCATGACAAAGAAGTAGCTGAAATAGCTGAAACTGATGAAACTGGCTCAGATAAGAAGTCAATGCATCTAGATGATTCAACTACAGTGGTGGCTGATAGTGAGAAGAAAGTTCTAAATGGATTGGATCCCATGGTGAGAACAGATTCTGACACATCTAAAAAGAGCGAAAAGAAGGATCCTAATAATAATCTGGATAGTTTATTTGTGTTGGGGAGTGTTTTTGTTGAGTTCGGTAGAATGGAAGCCTCGTATACGGCTGCACACTCTTTACATGGAAGGATTTATGATGGACAAGAGATTAGCATCGAGTACATTCCTCATGATCTCTATCGTAAGAGGTGCAAGGAACTAGGTTATGGACATGATCGATTTACGGGTGAGGATATGGTTATCTTATAA 2730 40.33 MSTYSCSKQYSRRSVKQTLYNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKEETLLKDNMVVRSDRNNYESGLTLMGKLKYDANGKDRRQKYGQENLGWGKNDQRSRMDIENETGKRHSRDTASKDRREDRGKGKFERESKRKYQNGDDDRNRDRYIAKRHDHGKHHDLENRQKKEAKISLSSHYEDSRLKRRRKRSQDRESKHKRSGSLSPRPPKHSTKLVRQKELPLDSHVKKSGRWRSDSDRTGDFTNSSSSQYRRHSGSTSGLGGYSPRKRRTESAIKTPSPVRSPEKKNEALDLLPAEKVGLFSGSVTSNFQPSNPTVLLGISNDQSGGALFSPAMGKSVSGVSSNNLAMKTNASLDLIQLTQATRPMRRLYIENIPHSASEKEIIDCLNGFLTSSGVNHIEGTQPCISCIIHKDRGQALVEFLTPEDASAALAFDGSDFSGSILRIRRPKDYVEIIRDPYIRDCCLCSGITIEIGEFIKAHGSIVDVPTIKDILGQTGDLDKSVAVVNKISDVVEDSPNKIIIAGISNRISSEMLKDIVTAFGPLKAYHFEINSDLNEPCAFLEYVDQSVMPKACAGLNDVLPVLSESDIDEVLEDIRFECARFGMVKSMNVAKPCRGCVSAEEDYKSDVTGVEIKHEIQENSTLVISKNDNDLEDNKANLDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVACEQGSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTSKKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRKRCKELGYGHDRFTGEDMVIL 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4482725 4492990 - Maker00023718 Lcy13g0392 650697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0392 909 MobiDBLite consensus disorder prediction 816 838 - -
Lcy13g0392 909 MobiDBLite consensus disorder prediction 1 29 - -
Lcy13g0392 909 Gene3D - 429 641 IPR012677 -
Lcy13g0392 909 PANTHER RNA-BINDING PROTEIN 645 890 - GO:0000243(PANTHER)|GO:0008187(PANTHER)|GO:0016607(PANTHER)|GO:0030628(PANTHER)|GO:0071004(PANTHER)|GO:0089701(PANTHER)
Lcy13g0392 909 FunFam Splicing factor U2af large subunit A 429 534 - -
Lcy13g0392 909 MobiDBLite consensus disorder prediction 147 349 - -
Lcy13g0392 909 MobiDBLite consensus disorder prediction 301 325 - -
Lcy13g0392 909 MobiDBLite consensus disorder prediction 157 249 - -
Lcy13g0392 909 MobiDBLite consensus disorder prediction 1 106 - -
Lcy13g0392 909 Gene3D - 793 896 IPR012677 -
Lcy13g0392 909 MobiDBLite consensus disorder prediction 274 300 - -
Lcy13g0392 909 SUPERFAMILY RNA-binding domain, RBD 654 889 IPR035979 GO:0003676(InterPro)
Lcy13g0392 909 MobiDBLite consensus disorder prediction 59 84 - -
Lcy13g0392 909 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 512 IPR000504 GO:0003723(InterPro)
Lcy13g0392 909 SMART rrm1_1 581 652 IPR000504 GO:0003723(InterPro)
Lcy13g0392 909 SMART rrm1_1 430 508 IPR000504 GO:0003723(InterPro)
Lcy13g0392 909 SUPERFAMILY RNA-binding domain, RBD 426 641 IPR035979 GO:0003676(InterPro)
Lcy13g0392 909 Gene3D - 553 629 IPR012677 -
Lcy13g0392 909 MobiDBLite consensus disorder prediction 824 838 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0392 K12837 - - csv:101213128 999.964
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35