Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0404 ATGGCCGGTGAGGTAGCGGTGGAGGGTGCTGCGGCGGCGGCGGCCGAAGTAGCCGATTCGAATCAACAGTCCCACAAATTGGAGAGAAAATGGACTTTTTGGTTCGATAACCAGTCAAGGCCGAAGCAAGGTGCGGCTTGGGGCACCTCTCTGCGCAAGGTCTATACCTTCGACACCGTCGAAGAATTTTGGTGTTTGTATGATCAAATATTCAAGCCGAGCAAGCTGCCGGCTAATGCAGATTTCCATTTGTTCAAATCTGGAGTTGAACCGAAATGGGAAGATCCTGAGTGCGCGAATGGAGGAAAATGGACTGTCACGAGCAGTAGAAAGGCTAGCCTCGATAACATGTGGCTGGAAACGTTGATGGCTCTAATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCTAGCGTGCGCCAGAGGCAGGACAAACTTGCATTGTGGACCAAGACAGCTACAAATGAGGCTGCTCAGATGAGCATTGGTAGGAAATGGAAGGAGATCATCGATGTCAACGACAAGATATCCTTCAGCTTTAATGAGGATTTGAGAAGGGAAAAGTCAGCAAAAGCTCGATACAGTGTCTGA 603 49.25 MAGEVAVEGAAAAAAEVADSNQQSHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLYDQIFKPSKLPANADFHLFKSGVEPKWEDPECANGGKWTVTSSRKASLDNMWLETLMALIGEQFEESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEIIDVNDKISFSFNEDLRREKSAKARYSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4699677 4703778 - Maker00023724 Lcy13g0404 650709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0404 200 Gene3D RNA Cap, Translation Initiation Factor Eif4e 15 200 IPR023398 -
Lcy13g0404 200 SUPERFAMILY eIF4e-like 21 184 IPR023398 -
Lcy13g0404 200 ProSitePatterns Eukaryotic initiation factor 4E signature. 81 104 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Lcy13g0404 200 FunFam Eukaryotic translation initiation factor 4E 16 200 - -
Lcy13g0404 200 Coils Coil 10 30 - -
Lcy13g0404 200 Pfam Eukaryotic initiation factor 4E 26 182 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy13g0404 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 16 191 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0404 Lcy-Chr13:4699677 Lcy5g1788 Lcy-Chr5:40598968 1.24E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0404 K03259 - csv:101208495 377.096