Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0404 | ATGGCCGGTGAGGTAGCGGTGGAGGGTGCTGCGGCGGCGGCGGCCGAAGTAGCCGATTCGAATCAACAGTCCCACAAATTGGAGAGAAAATGGACTTTTTGGTTCGATAACCAGTCAAGGCCGAAGCAAGGTGCGGCTTGGGGCACCTCTCTGCGCAAGGTCTATACCTTCGACACCGTCGAAGAATTTTGGTGTTTGTATGATCAAATATTCAAGCCGAGCAAGCTGCCGGCTAATGCAGATTTCCATTTGTTCAAATCTGGAGTTGAACCGAAATGGGAAGATCCTGAGTGCGCGAATGGAGGAAAATGGACTGTCACGAGCAGTAGAAAGGCTAGCCTCGATAACATGTGGCTGGAAACGTTGATGGCTCTAATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCTAGCGTGCGCCAGAGGCAGGACAAACTTGCATTGTGGACCAAGACAGCTACAAATGAGGCTGCTCAGATGAGCATTGGTAGGAAATGGAAGGAGATCATCGATGTCAACGACAAGATATCCTTCAGCTTTAATGAGGATTTGAGAAGGGAAAAGTCAGCAAAAGCTCGATACAGTGTCTGA | 603 | 49.25 | MAGEVAVEGAAAAAAEVADSNQQSHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLYDQIFKPSKLPANADFHLFKSGVEPKWEDPECANGGKWTVTSSRKASLDNMWLETLMALIGEQFEESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEIIDVNDKISFSFNEDLRREKSAKARYSV | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4699677 | 4703778 | - | Maker00023724 | Lcy13g0404 | 650709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0404 | 200 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 15 | 200 | IPR023398 | - | |
Lcy13g0404 | 200 | SUPERFAMILY | eIF4e-like | 21 | 184 | IPR023398 | - | |
Lcy13g0404 | 200 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 81 | 104 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Lcy13g0404 | 200 | FunFam | Eukaryotic translation initiation factor 4E | 16 | 200 | - | - | |
Lcy13g0404 | 200 | Coils | Coil | 10 | 30 | - | - | |
Lcy13g0404 | 200 | Pfam | Eukaryotic initiation factor 4E | 26 | 182 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy13g0404 | 200 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 16 | 191 | IPR001040 | GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0404 | Lcy-Chr13:4699677 | Lcy5g1788 | Lcy-Chr5:40598968 | 1.24E-75 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0404 | K03259 | - | csv:101208495 | 377.096 |