Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0413 ATGAGGACTTACGCCGTCGCCTGGGTCCATCCTGACCGGAAACTCTCCACCCGAGTCGACACTCACGGCCACAACAACCCAACGTGGAACGACAAGTTCGTCTTCCGCGTCGACGACGAGTTCTTGCACGCCGACACCTCCGCGGTCATGATCGAGATCTACGCCCTGCATTGGTTTAAAGACATTCACGTTGGCACCGTCAGGATTCTCGTTGGGAATCTCATCCCGACCCCGCCGCGGCTCCACCAGTTCAGCCAACAGCCGCAGGTCGGGATGCGATTTGTGGCGCTGCAGGTCCGGCGGCCGTCGGGTCGGCCGCAGGGGATTTTGAACATTGGGGTTGCTCTGCTTCATAGCTCGATGAGGAGCATGCCGTTGTATTCGCAGCTGAGTACCTCGGCGATTGGGTACCGGAATCTCATGGGGGAGGAGGACCCATTTCACAATCATCACAGTAACACCAACAATCACAGCCATGGGACTCCGACGGTGGTGACGCGCCCGGAGATGAGAAGGTCGAAGAGCGATACGAGCTCGATGATGGGGTCGGAGCTTCGTGGGTCGGAGATGATGGGAAAGGGAATGAAATCGAAGGCGAGTTCTATGATCAATGGGTCGGAGGTTTCGAAGCATAAGAAAAAGGGGAGATCGAAAGCGAGCTCCATGATCAGTGGATCGGTTGTCATTAAACGAAAAGGGAAATCGAGGAAGGCCAGTTCAATGCTCAGTGGATCGGGGATTGAAGAAGCTTATAACAAACAAAACGGGAAGAATGGGAAATCCAATGCTGTAATTGTAGGGAAGAAAGAAAAAACTGAACCATCCAGCATTCTTAGCGGCTCTGAAGTTTACCCAATCGAGCTACCGCCGAACAAGAAGGAAACACCAGTACACAAACCCAATTCCAGCGAAGAAACCTTCGATTCACCGCCATGGAAGAAGCCGCAGGAGAAACCCATTTCGAGACCGGAGGTAACCGATTCACCGAGGGGGAAACCGGGTCAAGAAACGCCCAATTCGAGGTTTGATAAAATGCCTTACGCCACGCCGTTGAGGACTCCACAGAGGCTCGCCGGCGGCGGTGGAACTGCCAGAGCAACTCCGATGCACGAGAAATTTGCGACGCCGCGAAGAACGCCGACGCCGTTGCACGGGAAATCATCCCACACGAAATACAACAACGACTTCAACTACACAACACCGAGGAAATCGTTTTTGGGCGGCGCGATTTTGACGGAGTCGGAGCTCGGTCCGTCGCCGTCGGAGGTGGCTGCGCAAATGGCGACGCAGAAAGTCGATGACAACGAGAGCTCGATCGTCGGTGGGTTGAGTCTGAACGACAGCGTCGAGGGTCTACAATCGAAGCTGGAGCGGTGGCGGACGGAGCTCCCACCGGTGTACGACCGCGGCGAGTTATCGAGCTTTCCGCCGAGCGAATCCCGACACAATCGCCGTCACAGCGACGGCGGCGGCCTGTTCTCCTGTTTCAGTAACATTTGCGGCTGTGAATGCTCCATCGTCTGCGGCGGCGGCTCGCAGAAAGCACCGAAGAAATCCCCCAGTGGCCGTGTTGGTCGGAGCCCATCGGCGGACAACGTGAGCTTCATGTGA 1611 55.99 MRTYAVAWVHPDRKLSTRVDTHGHNNPTWNDKFVFRVDDEFLHADTSAVMIEIYALHWFKDIHVGTVRILVGNLIPTPPRLHQFSQQPQVGMRFVALQVRRPSGRPQGILNIGVALLHSSMRSMPLYSQLSTSAIGYRNLMGEEDPFHNHHSNTNNHSHGTPTVVTRPEMRRSKSDTSSMMGSELRGSEMMGKGMKSKASSMINGSEVSKHKKKGRSKASSMISGSVVIKRKGKSRKASSMLSGSGIEEAYNKQNGKNGKSNAVIVGKKEKTEPSSILSGSEVYPIELPPNKKETPVHKPNSSEETFDSPPWKKPQEKPISRPEVTDSPRGKPGQETPNSRFDKMPYATPLRTPQRLAGGGGTARATPMHEKFATPRRTPTPLHGKSSHTKYNNDFNYTTPRKSFLGGAILTESELGPSPSEVAAQMATQKVDDNESSIVGGLSLNDSVEGLQSKLERWRTELPPVYDRGELSSFPPSESRHNRRHSDGGGLFSCFSNICGCECSIVCGGGSQKAPKKSPSGRVGRSPSADNVSFM 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4736696 4738306 + Maker00023271 Lcy13g0413 650718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0413 536 PANTHER INGRESSION PROTEIN FIC1 1 426 - -
Lcy13g0413 536 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 130 IPR035892 -
Lcy13g0413 536 MobiDBLite consensus disorder prediction 266 399 - -
Lcy13g0413 536 ProSiteProfiles C2 domain profile. 1 85 IPR000008 -
Lcy13g0413 536 Gene3D C2 domain 1 126 IPR035892 -
Lcy13g0413 536 MobiDBLite consensus disorder prediction 148 243 - -
Lcy13g0413 536 Pfam C2 domain 2 79 IPR000008 -
Lcy13g0413 536 MobiDBLite consensus disorder prediction 381 399 - -
Lcy13g0413 536 MobiDBLite consensus disorder prediction 511 536 - -
Lcy13g0413 536 MobiDBLite consensus disorder prediction 310 325 - -
Lcy13g0413 536 CDD C2_SRC2_like 1 112 IPR044750 GO:0006952(InterPro)
Lcy13g0413 536 MobiDBLite consensus disorder prediction 468 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2032 Lcy-Chr11:43866921 Lcy13g0413 Lcy-Chr13:4736696 1.23E-36 dispersed
Lcy13g0413 Lcy-Chr13:4736696 Lcy4g1450 Lcy-Chr4:36167264 2.17E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g787 . . Bda03g01098 Bda08g00001 Bpe04g00982 Bpe14g01285 Bma04g01023 . Cmo08g01028 Cmo17g00136 . . . . . . . . . . . . . . Cla06g00700 Cam06g0751 Cec06g0757 Cco06g0769 Clacu06g0742 Cmu06g0725 Cre06g1501 . . . . . Csa02g01025 Chy05g00289 . Blo02g00684 . . Bda13g00035 Bpe05g01111 . Bma02g00748 . Sed09g0214 . . Cma08g01057 Cma17g00133 Car08g00933 Car17g00119 . . Bhi12g01558 Tan06g2367 Cmetu05g1475 . . . Lcy13g0413 . . . . . . . Lsi09g01193 . . Cme05g00621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005929 3 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 2 1 1 38