Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0436 ATGGCGGCTTCAAATTGCTCACTGACTCTAGCCCAGTTCCTCGGCCCCAATGTCACCAACCCCACCGGCGCCGCCTCCTTCATCTGCGACCAATTCTCCACCTCCACCACCAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCCTTCGCCTTCGGTACCCCCTCCAACGTCTTCATCGGCCGCCATTTCTTCGGCCTCAAGTCCATCCCCTCCACCGCCGCCGACTACAGCTTCTTCCTCTATCAATGGGCTTTCGCTATTGCCGCCGCCGGCATCACCAGCGGTTCGATTGCTGAGCGGACCCAATTCGTCGCCTACTTGATCTACTCCTCTGTTTTGACCGGTTTTGTCTATCCGGTTGTATCCCACTGGTTCTGGTCCCCGGACGGTTGGGCCAGCCCCTCACGGGTCAACGGCGACCTCCTCTTCGGAACCGGAGTCATCGATTTCGCCGGTTCGGGTGTGGTTCACATGGTCGGCGGAGTCGCGGGACTTTGGGGTGCTTTAATAGAAGGCCCAAGAATCGGGAGGTTCGACAGAACCGGCCGATCCGTTGCACTTCGAGGTCATAGCGCTTCCTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCACTAAAATCCTCGTTCCGTACGGTTCGGGTAATTTCTACGGACAGTGGAGCGCCGTCGGCCGGACCGCCGTGACGACGACGTTGGCCGGATGCACAGCGGCGCTAACGACCCTTTTCGGAAAAAGGATCCTCTCCGGCCACTGGAACGTCACCGACGTCTGCAACGGCCTCCTTGGCGGCTTCGCCGCCATAACCTCCGGCTGCTCCGTCGTGGAGCCATGGGCCGCCGTGATATGTGGGTTTGTGGCGGCCCTGGTTCTAATAAGCTGCAACAAACTGGCGGAGAAGGTGAAATTCGACGACCCATTGGAGGCAGCGCAACTGCACGGCGGGTGCGGCGCGTGGGGGATAATTTTCACGGCGCTGTTCGCGAGGAAGAAGTATGTGAACGAGGTGTACGGCGGCGATGCTGGGAGGCCGCACGGGCTGTTTATGGGCGGCGGAGGGAAGTTGCTGGGGGCTCATTTGATACAGATTTTGGTGATTTTTGTGTGGGTTAGCGTCACAATGGGGCCGTTGTTCTTCGTGCTTCATAAGCTGAAGCTGTTGAGAATCTCGGCGGAGGATGAGATGGCCGGAATGGATATGACTCGCCACGGTGGATTTGCTTACGTGTACCACGATGAAGATGAATCTCCGGCGAATGGGATCCAGATGAGGAAGATTAAACCAGGGGAAACGAGTCCAATTGGGAATTAG 1503 58.02 MAASNCSLTLAQFLGPNVTNPTGAASFICDQFSTSTTNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNVFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRVNGDLLFGTGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDRTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYGSGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAALVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFARKKYVNEVYGGDAGRPHGLFMGGGGKLLGAHLIQILVIFVWVSVTMGPLFFVLHKLKLLRISAEDEMAGMDMTRHGGFAYVYHDEDESPANGIQMRKIKPGETSPIGN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5033901 5035403 - Maker00023381 Lcy13g0436 650741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0436 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy13g0436 500 Gene3D Ammonium transporter AmtB like domains 27 491 IPR029020 -
Lcy13g0436 500 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy13g0436 500 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy13g0436 500 FunFam Ammonium transporter 28 487 - -
Lcy13g0436 500 PANTHER AMMONIUM TRANSPORTER 27 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Lcy13g0436 500 SUPERFAMILY Ammonium transporter 46 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1719 Lcy-Chr11:41051676 Lcy13g0436 Lcy-Chr13:5033901 2.12E-293 dispersed
Lcy13g0436 Lcy-Chr13:5033901 Lcy4g1431 Lcy-Chr4:35520064 2.01E-258 dispersed
Lcy12g2072 Lcy-Chr12:42103574 Lcy13g0436 Lcy-Chr13:5033901 1.18E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0436 K03320 - csv:101212168 917.531