Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0438 ATGGTTCTTAAAATGCTGTTTTGTTTGCTGCTGCTGGCTTTTCTGTTTAATACTTCACATGGGTTGAATCCAGAAGGATATTTTCTCTTGGAGCTGAAAGATGGTCTGTCTGATCCATTTGGTTCATTGAGAAACTGGGATTCGAGTGACGAAACACCATGTGGATGGACTGGTGTAGACTGCACTTCTGGTGTGGAACCAGTCGTCTATTCTCTTGACTTGAGCTTGAAGAATCTTTCGGGTCCTTTAAGGTCGAGCATCGGTAATTTAGTCCACCTCTCTTATCTCAATCTTTCCTTCAATGGATTCACTGGAAGTATACCGAAAGAGATCAGTAATTGTATGGGGTTGGAGTATCTTGTACTGAACAACAATAAGTTTGATGGGAAACTTCCATCTGAATTGGGAAAGCTGACATCTTTGGTTATGTTGAATATATGTAATAATGGAATTCATGGTTCTTTTCCTGAGGAAATTGGAAATTTGAAATCCTTGGTTGAATTAGTTGCATATACCAACAATATCACCGGTTCGTTGCCTCGATCTTTTGGAAACCTCAAGAGCTTGAGAAGGTTTAGAGCAGGACAGAATGCGATTTCGGGAAGGCTACCAGCTGAAATAGGTCAGTGTGAGAACTTGGAAACACTTGGCCTTGCCCAAAATCAGTTAGAAGGGGAATTACCAAAGGAGCTTGGCATGCTTAGAAACTTGACTGAATTGATTCTTTGGGAGAACCAGTTTTCTGGGATTCTACCAAAAGAGCTTGGAAACTGTACAAGTCTAACTATTCTTGCTCTGTATGAGAACAATCTTGGTGGACCCATACCCAAGGAGTTTGGGAACCTAATCTCTTTGAAGAAGTTGTATATATACCGAAACGCATTGAATGGAACCATTCCGAGCGAGCTTGGGAACCTTTCTCTGGCAATAGAGATAGACTTCTCGGAGAACTATTTGACTGGTGAGATACCTAAAGAGTTTAGCAACATAAACGGTCTACAATTACTGTATCTCTTTCAAAACCAGCTGACTGGTGTTATACCAAATGAACTTAGTAGCCTGAGTAACTTGACTAAACTTGATCTTTCAATCAACAACCTCACAGGCCCTGTACCATTCGGGTTTCAGTATATGCCTTCATTGATTCAATTGCAGCTTTTTGAAAACAGTTTGAGTGGCAGCATTCCCCAAGGACTTGGACGTTATAGCGCCCTATGGGTGGTCGACTTTTCAGACAATCTCTTGACAGGACGGATACCTCCCCATCTATGTCGTCATTCTAACTTGATCATCTTGAACTTGGAGTCAAATAACCTTTATGGAAATATACCTACTGGGATCTTGAACTGCAGACCATTGTTGCAAATTCGTCTGGTCGGAAACAGGTTAACTGGCGGCTTTCCATCAGAGTTGTGTAACTTGGTGAACCTTACTGCCATTGACTTGGATCAGAACAGATTTAGTGGTCCGCTTCCTCCAGAAATCAGAAATTGCCAAAAGTTGCAAAGGCTGCATATTTCAAACAATTACTTTACATCTAATTTGCCGAAGGAGATAGGAAACCTCGTGCAGCTGGCGACTTTAAACGTTTCTTCAAATCTTTTTACTGGGCCAATTCCACCCGAAATAGTCAATTGCAAGACTCTCCAACGACTCGATCTTAGCCACAACAGCTTTGAAAATACTTTGCCAAAGGAGATTGGATCTCTTTTGCAGTTGGAAATTCTTAGAGTTTCAGAAAATAAATTTTCAGGAAATATACCTGGAGAATTGAGAAACCTCTCCCATTTAACAGAATTGCAAATGGGTGGGAATTCATTCTCTGGTAGCATTCCTATGGAGCTAGGGTCCCTAAAAAGCTTGCAGATTGCTCTGAACCTCAGCTTTAATATGCTAACTGGGACAATACCACAAGAACTAGGAAATCTGATTCTACTGGAATATCTCCTGCTTAATAACAATAATTTGACTGGTGAAATACCTAGCTCCTTTGCCAGTCTTTCCAGTTTAATGGGCTGCAACTTCTCATACAACGACCTCCGTGGTCCTATCCCTTCGATACCTTTGTTTCAGAACATGCCTACTAGTAGCTTCATTGGCAATAAGGGGCTCTGTGGTGGACCTCTTGGTGACTGCATTGGAGATTCATCTTCTCCATCTATTCCATCTTTCGAGAGCATAAATGCGCCTCGAGGTAGAATCATAACTGGGATTGCTGCTACTATAGGTGGAGTTTCTATTGTTCTAATTGTGATCATTTTATATTGCATGAGACATCCGCCCGATATAGTGCAAAACAAGGAAACACAATCTCTGGATTCCGACGTGTACTTCCCGCCCAAGGAAGGTTTTACTTTCCAAGATCTAATTGAAGCCACAAATAGTTTTCATGAGAGCTGTGTGGTGGGAAAAGGTGCTTGTGGAACTGTATACAAGGCAGTGATGCATTCTGGACAGACCGTTGCTGTCAAGAAGTTAGCGTCAAATAGGGAAGGGAGCAATATTGAGAATAGCTTTCGGGCTGAGATTTCGACGCTAGGAAAGATTAGACATCGGAATATCGTTAAACTATATGGATTTTGTTATCACCAGGGTTCGAATCTTCTTCTCTATGAGTACATGGAAAGGGGTAGTTTGGGTGAGTTGCTTCACGGGACCGCGTGTAACTTGGAATGGCCGACTCGGTTTACAATAGCCATTGGAGCTGCAGAGGGACTTGCTTATCTACACCATGGCTGCAAACCAAGAATCATACATCGTGATATCAAATCAAATAACATTCTCCTTGATTATAACTTTGAGGCACATGTTGGTGATTTCGGTTTGGCGAAAGTGATGGACATGCCTCAATCTAAATCAATGTCAGCAGTCGCTGGATCATACGGATACATCGCTCCAGAATATGCATACACCATGAAGGTCACAGAAAAATGTGACATATACAGCTATGGGGTAGTTTTACTAGAACTGCTAACTGGAAGAACTCCAGTACAACCAATCGATCAGGGAGGCGATCTCGTCACATGGGTCAGAAACTATATGCGAGACCATTCGATGTCGTCTGGAATGCTAGATCAGCGACTAAATCTTCAAGACCAAGCCATGGTCGATCACATGCTAACAGTCCTAAAAGTAGCTTTAATGTGCACAAGTTTGTCTCCTTTCCAACGACCATCGATGCGGGAAGTCGTATTGATGCTTTTAGAATCTACCGAGCCCGACGAAGATCATATTCCAGCTTTAACTTATAATCTAGCTCCGAAGGACGATGCAACCTCATGA 3282 42.05 MVLKMLFCLLLLAFLFNTSHGLNPEGYFLLELKDGLSDPFGSLRNWDSSDETPCGWTGVDCTSGVEPVVYSLDLSLKNLSGPLRSSIGNLVHLSYLNLSFNGFTGSIPKEISNCMGLEYLVLNNNKFDGKLPSELGKLTSLVMLNICNNGIHGSFPEEIGNLKSLVELVAYTNNITGSLPRSFGNLKSLRRFRAGQNAISGRLPAEIGQCENLETLGLAQNQLEGELPKELGMLRNLTELILWENQFSGILPKELGNCTSLTILALYENNLGGPIPKEFGNLISLKKLYIYRNALNGTIPSELGNLSLAIEIDFSENYLTGEIPKEFSNINGLQLLYLFQNQLTGVIPNELSSLSNLTKLDLSINNLTGPVPFGFQYMPSLIQLQLFENSLSGSIPQGLGRYSALWVVDFSDNLLTGRIPPHLCRHSNLIILNLESNNLYGNIPTGILNCRPLLQIRLVGNRLTGGFPSELCNLVNLTAIDLDQNRFSGPLPPEIRNCQKLQRLHISNNYFTSNLPKEIGNLVQLATLNVSSNLFTGPIPPEIVNCKTLQRLDLSHNSFENTLPKEIGSLLQLEILRVSENKFSGNIPGELRNLSHLTELQMGGNSFSGSIPMELGSLKSLQIALNLSFNMLTGTIPQELGNLILLEYLLLNNNNLTGEIPSSFASLSSLMGCNFSYNDLRGPIPSIPLFQNMPTSSFIGNKGLCGGPLGDCIGDSSSPSIPSFESINAPRGRIITGIAATIGGVSIVLIVIILYCMRHPPDIVQNKETQSLDSDVYFPPKEGFTFQDLIEATNSFHESCVVGKGACGTVYKAVMHSGQTVAVKKLASNREGSNIENSFRAEISTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGTACNLEWPTRFTIAIGAAEGLAYLHHGCKPRIIHRDIKSNNILLDYNFEAHVGDFGLAKVMDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPIDQGGDLVTWVRNYMRDHSMSSGMLDQRLNLQDQAMVDHMLTVLKVALMCTSLSPFQRPSMREVVLMLLESTEPDEDHIPALTYNLAPKDDATS 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5069737 5074574 + Maker00023197 Lcy13g0438 650743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0438 1093 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 21 180 - -
Lcy13g0438 1093 SUPERFAMILY L domain-like 24 317 - -
Lcy13g0438 1093 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Lcy13g0438 1093 Gene3D Ribonuclease Inhibitor 22 173 IPR032675 -
Lcy13g0438 1093 SUPERFAMILY Protein kinase-like (PK-like) 773 1067 IPR011009 -
Lcy13g0438 1093 Pfam Protein kinase domain 797 1064 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0438 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 402 716 - -
Lcy13g0438 1093 Gene3D Ribonuclease Inhibitor 283 447 IPR032675 -
Lcy13g0438 1093 PANTHER RECEPTOR-LIKE PROTEIN 55 387 1066 - -
Lcy13g0438 1093 SMART serkin_6 796 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0438 1093 Gene3D Ribonuclease Inhibitor 453 716 IPR032675 -
Lcy13g0438 1093 Gene3D Transferase(Phosphotransferase) domain 1 874 1081 - -
Lcy13g0438 1093 Gene3D Phosphorylase Kinase; domain 1 762 873 - -
Lcy13g0438 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 274 378 - -
Lcy13g0438 1093 ProSiteProfiles Protein kinase domain profile. 796 1068 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0438 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 874 1082 - -
Lcy13g0438 1093 Gene3D Ribonuclease Inhibitor 174 278 IPR032675 -
Lcy13g0438 1093 SMART LRR_typ_2 549 570 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 90 114 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 282 306 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 378 402 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 643 666 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 522 546 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 162 185 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 354 377 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 186 210 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 474 498 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 594 618 IPR003591 -
Lcy13g0438 1093 SMART LRR_typ_2 234 257 IPR003591 -
Lcy13g0438 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 873 - -
Lcy13g0438 1093 SUPERFAMILY RNI-like 245 560 - -
Lcy13g0438 1093 SUPERFAMILY L domain-like 520 691 - -
Lcy13g0438 1093 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 181 263 - -
Lcy13g0438 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 917 929 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 117 138 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 549 570 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 356 377 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 596 618 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 646 667 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 625 643 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 236 258 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 572 594 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Lcy13g0438 1093 Pfam Leucine Rich Repeat 333 354 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1741 Lcy-Chr11:41195720 Lcy13g0438 Lcy-Chr13:5069737 6.39E-201 dispersed
Lcy13g0438 Lcy-Chr13:5069737 Lcy1g0015 Lcy-Chr1:147802 9.78E-88 dispersed
Lcy9g1631 Lcy-Chr9:41458414 Lcy13g0438 Lcy-Chr13:5069737 1.33E-26 dispersed
Lcy13g0438 Lcy-Chr13:5069737 Lcy13g0444 Lcy-Chr13:5209544 1.50E-81 proximal
Lcy12g1591 Lcy-Chr12:35990174 Lcy13g0438 Lcy-Chr13:5069737 2.21E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65555 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0438 K27590 - csv:101221337 1899.02