Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0455 ATGGGTAGCGACGGAAAGGTCTTCACATTGGCTGAAGTCTCTCAGCACAACAACCGTAAGGACTGTTGGTTGATCATCAATGCCAAGGACCGGGATCTCGTTGAAGACATAGAATCTGAGGTTTATAATGTAACCGAGTTCTTGGAAGACCATTCCGGTGGCGACGAGGTTTTGTTGTCAGGCACGGGTAAGGATGCAACGGATGATTTTGAAGATGTTGGTCATAGCGAGAGCGCAAGAGAAATGATGAACAAATACTACGTTGGAGAGATCGACACCTCGACGATCCCAGAAAGGTCGACATACACAGCTCCAAAGCAGCCTCACTACAATCAGGATAAGACAACGGAGTTCATCGTCAAGCTCCTCCAGTTCCTGGTTCCTCTCGCAATCTTGGGTATAGCAGTCGGTATCCGCTTTTACAGCAAATCAACCTGA 438 47.72 MGSDGKVFTLAEVSQHNNRKDCWLIINAKDRDLVEDIESEVYNVTEFLEDHSGGDEVLLSGTGKDATDDFEDVGHSESAREMMNKYYVGEIDTSTIPERSTYTAPKQPHYNQDKTTEFIVKLLQFLVPLAILGIAVGIRFYSKST 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5422322 5426353 - Maker00023921 Lcy13g0455 650760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0455 145 SMART Cyt_b5_2 8 92 IPR001199 -
Lcy13g0455 145 PANTHER CYTOCHROME B5 5 137 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy13g0455 145 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 99 IPR036400 -
Lcy13g0455 145 Gene3D - 2 97 IPR036400 -
Lcy13g0455 145 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 92 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 51 65 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 66 73 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 41 51 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 79 91 IPR001199 -
Lcy13g0455 145 FunFam Cytochrome b5 type B 2 96 - -
Lcy13g0455 145 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 91 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0455 K23490 - - csv:101213506 239.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0455 Lcy-Chr13:5422322 Lcy3g0069 Lcy-Chr3:1833861 4.47E-47 dispersed
Lcy11g1769 Lcy-Chr11:41500761 Lcy13g0455 Lcy-Chr13:5422322 6.02E-72 wgd
Lcy12g2032 Lcy-Chr12:41663371 Lcy13g0455 Lcy-Chr13:5422322 3.21E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g751 . . . . . . . . . . . Cma19g00162 . . . . Cpe15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g2056 . Cmo19g00182 . . . . . . Bhi12g01507 Tan06g2314 Cmetu05g1957 . . . Lcy13g0455 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156