Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0455 ATGGGTAGCGACGGAAAGGTCTTCACATTGGCTGAAGTCTCTCAGCACAACAACCGTAAGGACTGTTGGTTGATCATCAATGCCAAGGACCGGGATCTCGTTGAAGACATAGAATCTGAGGTTTATAATGTAACCGAGTTCTTGGAAGACCATTCCGGTGGCGACGAGGTTTTGTTGTCAGGCACGGGTAAGGATGCAACGGATGATTTTGAAGATGTTGGTCATAGCGAGAGCGCAAGAGAAATGATGAACAAATACTACGTTGGAGAGATCGACACCTCGACGATCCCAGAAAGGTCGACATACACAGCTCCAAAGCAGCCTCACTACAATCAGGATAAGACAACGGAGTTCATCGTCAAGCTCCTCCAGTTCCTGGTTCCTCTCGCAATCTTGGGTATAGCAGTCGGTATCCGCTTTTACAGCAAATCAACCTGA 438 47.72 MGSDGKVFTLAEVSQHNNRKDCWLIINAKDRDLVEDIESEVYNVTEFLEDHSGGDEVLLSGTGKDATDDFEDVGHSESAREMMNKYYVGEIDTSTIPERSTYTAPKQPHYNQDKTTEFIVKLLQFLVPLAILGIAVGIRFYSKST 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5422322 5426353 - Maker00023921 Lcy13g0455 650760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0455 145 SMART Cyt_b5_2 8 92 IPR001199 -
Lcy13g0455 145 PANTHER CYTOCHROME B5 5 137 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy13g0455 145 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 99 IPR036400 -
Lcy13g0455 145 Gene3D - 2 97 IPR036400 -
Lcy13g0455 145 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 92 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 51 65 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 66 73 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 41 51 IPR001199 -
Lcy13g0455 145 PRINTS Cytochrome B5 signature 79 91 IPR001199 -
Lcy13g0455 145 FunFam Cytochrome b5 type B 2 96 - -
Lcy13g0455 145 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 91 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0455 Lcy-Chr13:5422322 Lcy3g0069 Lcy-Chr3:1833861 4.47E-47 dispersed
Lcy11g1769 Lcy-Chr11:41500761 Lcy13g0455 Lcy-Chr13:5422322 6.02E-72 wgd
Lcy12g2032 Lcy-Chr12:41663371 Lcy13g0455 Lcy-Chr13:5422322 3.21E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0455 K23490 - csv:101213506 239.965