Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0459 ATGCAACTGAACCGCCTCTGTTTTCTTCTACCGGCGGACTTCGATGAAGTCCAGCCACTCGATCGGGAAGAGCTTCAAAAACCCAACAACAAAAACAAACAACATCACAATCGAGATTGCTGGTCTCAATTCCATGCCTTTCTCCGAGATTCCCTCTTCAAATTCCACGACCTCAAATGGGCTACTTCCTGTTGCTACGGCGGACCCAGAAAGCCGCTGACGCCGACGCCGTCCGGCGTCGGCGGCGTGTTTCACGACACCGACGGGGTGCAGCTTTCGGAGAAAGTCGGCGGCGACAATCCCAGAATCTTCAGCTTTGCGGAGCTCTATATTGGGACCAAAGGGTTCAGTGCGGAGGAAATTCTTGGCAGTGGCGGATTTGGGAAGGTTTACAGAGCAACTTTGCCGAGTGATGGAACTGTGGTGGCTGTGAAGTGTTTGGCTGAGAAAGGGGAGAAGTTTGAGAAGACGTTTGTGGCGGAGCTGGTGGCGGTGGCTCATCTCCGGCATCGGAATCTTGTCCGGCTCCGGGGGTGGTGTGTTCATGAAGATCAATTGTTTCTTGTTTATGATTATATGCCCAACCGGAGCTTAGACAGAGCACTTTTCCGGCGGGCGGAGAACGGCGGGACGGATCTGAGCTGGAAACAGAGAGTGAAGATTGTGAGTGGCTTGGCTGCTGCTCTGTTCTATCTTCATGAGCAATTAGAGACTCAGATCATTCACAGAGATGTTAAAACCAGCAACGTGATGCTTGATTCCAATTACAATGCTAGGCTTGGTGATTTTGGATTGGCAAGGTGGTTGGAGCATGAACTTGAGTACCAAAACAGGGTGCCGTCGATGGGCCACCACCAGTTCCGGCTGGTGGAAACCACCAGAATTGGCGGCACAATTGGGTATCTCCCACCGGAGAGTTTCCAGAGGAGAAGCATCGCCACTGCAAAATCTGATGTTTTCAGCTTTGGTATTGTGGTTCTTGAGGTGGTCTCTGGCCGGAGGGCGGTGGACCTTACATGTCCTGATGATCAGATTGTGTTGCTTGATTGGATTCGAAAGCTATCCGACGACGGCACGCCGCTTCTCTCCGGTGATAACCGGCTGCCAGATGGGTCTTATAATCTGATTGAAATGGAGCGTTTGATCCATTTGGGTCTCCTCTGTACACTCCAAAGTCCACAGTATAGGCCAAGTATGAAATGGGTTGTGGAAGCACTTTCTGGTGGTATGATGGGGAATTTTCCCGCTCTTCCATCGTTTCAGTCTCATCCTCAGTATATTTCTCTGTCTTCCAATGGCAGCACTAACAGAAGCACTAGCAGCAGCAGAACCACAGCGACAAGATCAGACACAACAACAATCACAGTTAGTTCCTCAGATTTCGTTTCAGCCAATGGAGAAACCATATACATGACTGCTGAGAATGGGAACAATAACAATTATACCAACTCTTCTGATCGGTTTCTTGACAGATCAAAAACTATGCAAATGATTGAAACCCCAAGAGAAATATCATTCAAAGAGATCATTTCAGCCACCAATAACTTCTCCGATTCGCAGCGGGTGGCGGAGCTTGATTTCGGAACTGCCTACCATGGCTTCCTTGACAGCAGCCACCATGTCCTAGTGAAGCGGCTTGGAATGAAGACTTGTCCTGCGCTAAGAGAGAGATTCTCGAATGAACTCCTTAACTTAGGCCGGCTTCGCCATAGAAACTTGATACAGCTTCGTGGTTGGTGCACAGAGCAAGGTGAGATGCTCGTGGTGTATGATTATTCAGCAGATCGCCTCTTGAGCCACCTGCTTTTCCACCATGACAATAGAGCCTTGCAATGGTGTTATAGATACAACATCATCAAATCTCTGGCTTCTGCAATTCTTTATCTTCACGAGGAATGGGATGAACAAGTCATCCACAGGAACATCACCTCATCAGCTGTCATTCTTGATCTTGATCTTAACCCAAGGCTGAGTTCTTTCGCCCTTGCAGAGTTCCTAACAAGAAATGAGCACGGCAATCATCATGTAACCATAGATAAAAGCAAATCAGTTCGTGGGATTTTCGGGTACATGTCCCCAGAGTATTTAGACTCTGGGGATGCGGTGGCGACAGCTGATATATACAGCTTTGGTGTGGTGGTGCTCGAGGTGGTAACAGGACAAATGGCCGTTGATTTTCGACGACCAGAAGTATTGCTGGTGAGGAAGGTCCATGAATTCCACGCCCGGAAAAGACCACTGGAAGAACTTGCTGATATAAGGCTGAATGGAGAGTACAACCACAAAGAACTGATGAGACTGTTGAGATTAGGAATCGCATGTACTCATTCAAACCCAGATTCAAGACCAAAAATGAGGCAGATAGTTAAAATACTAGATGGAAATGACCAATGCTTCACTACAGAAGAAAAAATGGAGAGCCTAGAAGGTTGGAAACAGAGTAATGCAACTTCTCTGTCACTGGTTAAGAGGATCCAAGCCCTGGGAATACAGTGA 2496 47.96 MQLNRLCFLLPADFDEVQPLDREELQKPNNKNKQHHNRDCWSQFHAFLRDSLFKFHDLKWATSCCYGGPRKPLTPTPSGVGGVFHDTDGVQLSEKVGGDNPRIFSFAELYIGTKGFSAEEILGSGGFGKVYRATLPSDGTVVAVKCLAEKGEKFEKTFVAELVAVAHLRHRNLVRLRGWCVHEDQLFLVYDYMPNRSLDRALFRRAENGGTDLSWKQRVKIVSGLAAALFYLHEQLETQIIHRDVKTSNVMLDSNYNARLGDFGLARWLEHELEYQNRVPSMGHHQFRLVETTRIGGTIGYLPPESFQRRSIATAKSDVFSFGIVVLEVVSGRRAVDLTCPDDQIVLLDWIRKLSDDGTPLLSGDNRLPDGSYNLIEMERLIHLGLLCTLQSPQYRPSMKWVVEALSGGMMGNFPALPSFQSHPQYISLSSNGSTNRSTSSSRTTATRSDTTTITVSSSDFVSANGETIYMTAENGNNNNYTNSSDRFLDRSKTMQMIETPREISFKEIISATNNFSDSQRVAELDFGTAYHGFLDSSHHVLVKRLGMKTCPALRERFSNELLNLGRLRHRNLIQLRGWCTEQGEMLVVYDYSADRLLSHLLFHHDNRALQWCYRYNIIKSLASAILYLHEEWDEQVIHRNITSSAVILDLDLNPRLSSFALAEFLTRNEHGNHHVTIDKSKSVRGIFGYMSPEYLDSGDAVATADIYSFGVVVLEVVTGQMAVDFRRPEVLLVRKVHEFHARKRPLEELADIRLNGEYNHKELMRLLRLGIACTHSNPDSRPKMRQIVKILDGNDQCFTTEEKMESLEGWKQSNATSLSLVKRIQALGIQ 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5480749 5483244 - Maker00023685 Lcy13g0459 650764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0459 831 SMART serkin_6 116 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0459 831 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524(InterPro)
Lcy13g0459 831 FunFam Receptor like protein kinase S.2 594 816 - -
Lcy13g0459 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0459 831 PANTHER - 100 423 IPR050528 GO:0005886(PANTHER)
Lcy13g0459 831 SUPERFAMILY Protein kinase-like (PK-like) 490 792 IPR011009 -
Lcy13g0459 831 ProSiteProfiles Protein kinase domain profile. 116 426 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0459 831 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Lcy13g0459 831 Gene3D Phosphorylase Kinase; domain 1 88 192 - -
Lcy13g0459 831 MobiDBLite consensus disorder prediction 428 452 - -
Lcy13g0459 831 Pfam Protein kinase domain 117 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0459 831 Pfam Protein tyrosine and serine/threonine kinase 522 792 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0459 831 FunFam Receptor like protein kinase S.2 193 412 - -
Lcy13g0459 831 ProSiteProfiles Protein kinase domain profile. 516 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0459 831 Gene3D Transferase(Phosphotransferase) domain 1 193 411 - -
Lcy13g0459 831 Gene3D Transferase(Phosphotransferase) domain 1 595 815 - -
Lcy13g0459 831 SUPERFAMILY Protein kinase-like (PK-like) 100 414 IPR011009 -
Lcy13g0459 831 FunFam Receptor like protein kinase S.2 90 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0459 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0459 Lcy-Chr13:5480749 Lcy5g0075 Lcy-Chr5:830646 1.85E-73 dispersed
Lcy13g0459 Lcy-Chr13:5480749 Lcy1g1468 Lcy-Chr1:14238402 6.71E-72 transposed
Lcy13g0459 Lcy-Chr13:5480749 Lcy5g0186 Lcy-Chr5:1847371 1.78E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65557 None None None None Lcy PK