Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0460 | ATGGCTTTGACAGCTTTGCTGTACCATTTGCTTTTTTGGGTCTTTGAATCTCTACCTTATTACTGGGAGTTATTTCCATCTGTTCAGGTAGTTGTGGCTGACATTGCTTGTATGCTATGTAAAAGGAATTGTGGAAAGATTATCTTGCTGACTGGAGGAGAAGAAATCAAGGGAGAGGGTTTTCTGGTTTTTCAAGACAAAGCTAAATATAAAGGTATCTCTTGCTTTTGTTTATTACTTTTCCTCCCTACCAGCCAGATTGCTTATAACCTAGGCTACATCAACTTCTTGGATGTAAGGTATCAATTTAGCAAAGATAGGGGCATTATCTGTAATACACTTAGGGGTTCTGCCCTTAAGAATGAGGACAATGGCTGTCTGCTCTGCTGTACCATTTTCTTCTCTGGGTCTTTGGATCTCTACGTTATTGCTGGTAGCTATTTCATCTGCTCAGTTCATTGGTTGATGGTAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGCAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCGTACCCACCACCACAAACAACATATGAGGATATTGTAGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAACTCCATTCTCTCATGGCAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCGGTTTTCAACTTTCCTTCGACGGCCACCAACGCATCTTTTGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATGATATCTGATTCCTCTCCATGCCCAAGTGCTGCGACAATTCCTGTACAGGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAAGCAGCGTCCCAGCAGCCCCGGACTGCTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTTGTCATCGCCAGCAGGAGGGTTTCCAGTGATCGGGGTCATTGATGGAAAATTTGATAGCGGATATCTCGTTACTGTTACCGTAGGAACAGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGAGCAACCTGCTCAGCAACAAGTATTGCAGCCTGGTGGTATTTTTGCCAAAGATGGTGCTACCTCCACCACACCAAATGCTCATCGTCGTCGCCGTCGGAAGAAATCCGAGATAAAACGGAGGGATCCTGCTCATCCAAAGCCAAATAGAAGTGGCTACAACTTCTTCTTTAAAGAACAGCATGCTAGACTCAAACCATTATACCCGGGGAAGGACAGAGAGATAAGTAGAATGATTGGTGAACTTTGGAATAAGGTTAAAGAGTCAGAAAGAACAGTATATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACGGGGCAGATCATCAGCGATGCAGTGCCATTACAACAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAAAATGACGAAACTGAGGGTGTTGACTCTCCTCAAAGCCCGGATAATGATACAAGCTACGTCGAAGGCGACTCTGGAGAGTATAAAACTGAAGAGAAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGATTCGGAAGAAGATGCATCTCCACACGGAGTTGGCAATGTGGACGTTAACATTTTGGTTCAGGAGGAACACTGCGAGACGAGGACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTCGGCGACAATAAAGAAGTTTTCGCCGGGGATTCGGTAATGGTGGAGGCAAAGGAAGAACCAGAACCAGAACCAACAACAGCCATTAGAGAAGGTTAA | 1974 | 45.29 | MALTALLYHLLFWVFESLPYYWELFPSVQVVVADIACMLCKRNCGKIILLTGGEEIKGEGFLVFQDKAKYKGISCFCLLLFLPTSQIAYNLGYINFLDVRYQFSKDRGIICNTLRGSALKNEDNGCLLCCTIFFSGSLDLYVIAGSYFICSVHWLMVEEERTEAGWGSRKELTMASTSFAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSLMATKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPMISDSSPCPSAATIPVQGMASMLPPSDNQAASQQPRTAATELPAVAPSLSSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQQVLQPGGIFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFKEQHARLKPLYPGKDREISRMIGELWNKVKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNDETEGVDSPQSPDNDTSYVEGDSGEYKTEEKEEEEEEEEEEEEDSEEDASPHGVGNVDVNILVQEEHCETRTAEEDVRKESSTVGDNKEVFAGDSVMVEAKEEPEPEPTTAIREG | 657 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5509030 | 5514328 | + | Maker00023328 | Lcy13g0460 | 650765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0460 | 657 | MobiDBLite | consensus disorder prediction | 606 | 627 | - | - | |
Lcy13g0460 | 657 | SMART | bright_3 | 209 | 300 | IPR001606 | GO:0003677(InterPro) | |
Lcy13g0460 | 657 | MobiDBLite | consensus disorder prediction | 412 | 452 | - | - | |
Lcy13g0460 | 657 | SUPERFAMILY | ARID-like | 204 | 311 | IPR036431 | GO:0003677(InterPro) | |
Lcy13g0460 | 657 | Pfam | HMG (high mobility group) box | 443 | 510 | IPR009071 | - | |
Lcy13g0460 | 657 | FunFam | High mobility group B protein 15 | 202 | 314 | - | - | |
Lcy13g0460 | 657 | Gene3D | High mobility group box domain | 427 | 522 | IPR036910 | - | |
Lcy13g0460 | 657 | Coils | Coil | 565 | 591 | - | - | |
Lcy13g0460 | 657 | MobiDBLite | consensus disorder prediction | 637 | 657 | - | - | |
Lcy13g0460 | 657 | Coils | Coil | 492 | 512 | - | - | |
Lcy13g0460 | 657 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 184 | 572 | - | - | |
Lcy13g0460 | 657 | SUPERFAMILY | HMG-box | 436 | 515 | IPR036910 | - | |
Lcy13g0460 | 657 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 443 | 510 | IPR009071 | - | |
Lcy13g0460 | 657 | SMART | ARID_2 | 205 | 295 | - | - | |
Lcy13g0460 | 657 | CDD | HMG-box_AtHMGB9-like | 443 | 509 | - | - | |
Lcy13g0460 | 657 | FunFam | High mobility group B protein 15 | 425 | 520 | - | - | |
Lcy13g0460 | 657 | CDD | ARID_HMGB9-like | 210 | 295 | IPR045303 | GO:0003677(InterPro) | |
Lcy13g0460 | 657 | ProSiteProfiles | ARID domain profile. | 208 | 299 | IPR001606 | GO:0003677(InterPro) | |
Lcy13g0460 | 657 | SMART | hmgende2 | 442 | 511 | IPR009071 | - | |
Lcy13g0460 | 657 | MobiDBLite | consensus disorder prediction | 543 | 657 | - | - | |
Lcy13g0460 | 657 | MobiDBLite | consensus disorder prediction | 423 | 437 | - | - | |
Lcy13g0460 | 657 | MobiDBLite | consensus disorder prediction | 569 | 590 | - | - | |
Lcy13g0460 | 657 | Pfam | ARID/BRIGHT DNA binding domain | 211 | 295 | IPR001606 | GO:0003677(InterPro) | |
Lcy13g0460 | 657 | Gene3D | - | 201 | 302 | IPR036431 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0460 | Lcy-Chr13:5509030 | Lcy9g2296 | Lcy-Chr9:47361510 | 3.21E-81 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19359 | None | None | None | None | Lcy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0460 | - | - | - | 0.0 |