Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0460 ATGGCTTTGACAGCTTTGCTGTACCATTTGCTTTTTTGGGTCTTTGAATCTCTACCTTATTACTGGGAGTTATTTCCATCTGTTCAGGTAGTTGTGGCTGACATTGCTTGTATGCTATGTAAAAGGAATTGTGGAAAGATTATCTTGCTGACTGGAGGAGAAGAAATCAAGGGAGAGGGTTTTCTGGTTTTTCAAGACAAAGCTAAATATAAAGGTATCTCTTGCTTTTGTTTATTACTTTTCCTCCCTACCAGCCAGATTGCTTATAACCTAGGCTACATCAACTTCTTGGATGTAAGGTATCAATTTAGCAAAGATAGGGGCATTATCTGTAATACACTTAGGGGTTCTGCCCTTAAGAATGAGGACAATGGCTGTCTGCTCTGCTGTACCATTTTCTTCTCTGGGTCTTTGGATCTCTACGTTATTGCTGGTAGCTATTTCATCTGCTCAGTTCATTGGTTGATGGTAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGCAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCGTACCCACCACCACAAACAACATATGAGGATATTGTAGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAACTCCATTCTCTCATGGCAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCGGTTTTCAACTTTCCTTCGACGGCCACCAACGCATCTTTTGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATGATATCTGATTCCTCTCCATGCCCAAGTGCTGCGACAATTCCTGTACAGGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAAGCAGCGTCCCAGCAGCCCCGGACTGCTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTTGTCATCGCCAGCAGGAGGGTTTCCAGTGATCGGGGTCATTGATGGAAAATTTGATAGCGGATATCTCGTTACTGTTACCGTAGGAACAGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGAGCAACCTGCTCAGCAACAAGTATTGCAGCCTGGTGGTATTTTTGCCAAAGATGGTGCTACCTCCACCACACCAAATGCTCATCGTCGTCGCCGTCGGAAGAAATCCGAGATAAAACGGAGGGATCCTGCTCATCCAAAGCCAAATAGAAGTGGCTACAACTTCTTCTTTAAAGAACAGCATGCTAGACTCAAACCATTATACCCGGGGAAGGACAGAGAGATAAGTAGAATGATTGGTGAACTTTGGAATAAGGTTAAAGAGTCAGAAAGAACAGTATATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACGGGGCAGATCATCAGCGATGCAGTGCCATTACAACAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAAAATGACGAAACTGAGGGTGTTGACTCTCCTCAAAGCCCGGATAATGATACAAGCTACGTCGAAGGCGACTCTGGAGAGTATAAAACTGAAGAGAAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGATTCGGAAGAAGATGCATCTCCACACGGAGTTGGCAATGTGGACGTTAACATTTTGGTTCAGGAGGAACACTGCGAGACGAGGACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTCGGCGACAATAAAGAAGTTTTCGCCGGGGATTCGGTAATGGTGGAGGCAAAGGAAGAACCAGAACCAGAACCAACAACAGCCATTAGAGAAGGTTAA 1974 45.29 MALTALLYHLLFWVFESLPYYWELFPSVQVVVADIACMLCKRNCGKIILLTGGEEIKGEGFLVFQDKAKYKGISCFCLLLFLPTSQIAYNLGYINFLDVRYQFSKDRGIICNTLRGSALKNEDNGCLLCCTIFFSGSLDLYVIAGSYFICSVHWLMVEEERTEAGWGSRKELTMASTSFAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSLMATKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPMISDSSPCPSAATIPVQGMASMLPPSDNQAASQQPRTAATELPAVAPSLSSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQQVLQPGGIFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFKEQHARLKPLYPGKDREISRMIGELWNKVKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNDETEGVDSPQSPDNDTSYVEGDSGEYKTEEKEEEEEEEEEEEEDSEEDASPHGVGNVDVNILVQEEHCETRTAEEDVRKESSTVGDNKEVFAGDSVMVEAKEEPEPEPTTAIREG 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5509030 5514328 + Maker00023328 Lcy13g0460 650765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0460 657 MobiDBLite consensus disorder prediction 606 627 - -
Lcy13g0460 657 SMART bright_3 209 300 IPR001606 GO:0003677(InterPro)
Lcy13g0460 657 MobiDBLite consensus disorder prediction 412 452 - -
Lcy13g0460 657 SUPERFAMILY ARID-like 204 311 IPR036431 GO:0003677(InterPro)
Lcy13g0460 657 Pfam HMG (high mobility group) box 443 510 IPR009071 -
Lcy13g0460 657 FunFam High mobility group B protein 15 202 314 - -
Lcy13g0460 657 Gene3D High mobility group box domain 427 522 IPR036910 -
Lcy13g0460 657 Coils Coil 565 591 - -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 637 657 - -
Lcy13g0460 657 Coils Coil 492 512 - -
Lcy13g0460 657 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 184 572 - -
Lcy13g0460 657 SUPERFAMILY HMG-box 436 515 IPR036910 -
Lcy13g0460 657 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 443 510 IPR009071 -
Lcy13g0460 657 SMART ARID_2 205 295 - -
Lcy13g0460 657 CDD HMG-box_AtHMGB9-like 443 509 - -
Lcy13g0460 657 FunFam High mobility group B protein 15 425 520 - -
Lcy13g0460 657 CDD ARID_HMGB9-like 210 295 IPR045303 GO:0003677(InterPro)
Lcy13g0460 657 ProSiteProfiles ARID domain profile. 208 299 IPR001606 GO:0003677(InterPro)
Lcy13g0460 657 SMART hmgende2 442 511 IPR009071 -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 543 657 - -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 423 437 - -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 569 590 - -
Lcy13g0460 657 Pfam ARID/BRIGHT DNA binding domain 211 295 IPR001606 GO:0003677(InterPro)
Lcy13g0460 657 Gene3D - 201 302 IPR036431 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0460 Lcy-Chr13:5509030 Lcy9g2296 Lcy-Chr9:47361510 3.21E-81 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19359 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0460 - - - 0.0