Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0460 ATGGCTTTGACAGCTTTGCTGTACCATTTGCTTTTTTGGGTCTTTGAATCTCTACCTTATTACTGGGAGTTATTTCCATCTGTTCAGGTAGTTGTGGCTGACATTGCTTGTATGCTATGTAAAAGGAATTGTGGAAAGATTATCTTGCTGACTGGAGGAGAAGAAATCAAGGGAGAGGGTTTTCTGGTTTTTCAAGACAAAGCTAAATATAAAGGTATCTCTTGCTTTTGTTTATTACTTTTCCTCCCTACCAGCCAGATTGCTTATAACCTAGGCTACATCAACTTCTTGGATGTAAGGTATCAATTTAGCAAAGATAGGGGCATTATCTGTAATACACTTAGGGGTTCTGCCCTTAAGAATGAGGACAATGGCTGTCTGCTCTGCTGTACCATTTTCTTCTCTGGGTCTTTGGATCTCTACGTTATTGCTGGTAGCTATTTCATCTGCTCAGTTCATTGGTTGATGGTAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGCAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCGTACCCACCACCACAAACAACATATGAGGATATTGTAGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAACTCCATTCTCTCATGGCAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCGGTTTTCAACTTTCCTTCGACGGCCACCAACGCATCTTTTGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATGATATCTGATTCCTCTCCATGCCCAAGTGCTGCGACAATTCCTGTACAGGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAAGCAGCGTCCCAGCAGCCCCGGACTGCTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTTGTCATCGCCAGCAGGAGGGTTTCCAGTGATCGGGGTCATTGATGGAAAATTTGATAGCGGATATCTCGTTACTGTTACCGTAGGAACAGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGAGCAACCTGCTCAGCAACAAGTATTGCAGCCTGGTGGTATTTTTGCCAAAGATGGTGCTACCTCCACCACACCAAATGCTCATCGTCGTCGCCGTCGGAAGAAATCCGAGATAAAACGGAGGGATCCTGCTCATCCAAAGCCAAATAGAAGTGGCTACAACTTCTTCTTTAAAGAACAGCATGCTAGACTCAAACCATTATACCCGGGGAAGGACAGAGAGATAAGTAGAATGATTGGTGAACTTTGGAATAAGGTTAAAGAGTCAGAAAGAACAGTATATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACGGGGCAGATCATCAGCGATGCAGTGCCATTACAACAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAAAATGACGAAACTGAGGGTGTTGACTCTCCTCAAAGCCCGGATAATGATACAAGCTACGTCGAAGGCGACTCTGGAGAGTATAAAACTGAAGAGAAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGATTCGGAAGAAGATGCATCTCCACACGGAGTTGGCAATGTGGACGTTAACATTTTGGTTCAGGAGGAACACTGCGAGACGAGGACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTCGGCGACAATAAAGAAGTTTTCGCCGGGGATTCGGTAATGGTGGAGGCAAAGGAAGAACCAGAACCAGAACCAACAACAGCCATTAGAGAAGGTTAA 1974 45.29 MALTALLYHLLFWVFESLPYYWELFPSVQVVVADIACMLCKRNCGKIILLTGGEEIKGEGFLVFQDKAKYKGISCFCLLLFLPTSQIAYNLGYINFLDVRYQFSKDRGIICNTLRGSALKNEDNGCLLCCTIFFSGSLDLYVIAGSYFICSVHWLMVEEERTEAGWGSRKELTMASTSFAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSLMATKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPMISDSSPCPSAATIPVQGMASMLPPSDNQAASQQPRTAATELPAVAPSLSSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQQVLQPGGIFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFKEQHARLKPLYPGKDREISRMIGELWNKVKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNDETEGVDSPQSPDNDTSYVEGDSGEYKTEEKEEEEEEEEEEEEDSEEDASPHGVGNVDVNILVQEEHCETRTAEEDVRKESSTVGDNKEVFAGDSVMVEAKEEPEPEPTTAIREG 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5509030 5514328 + Maker00023328 Lcy13g0460 650765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0460 657 MobiDBLite consensus disorder prediction 606 627 - -
Lcy13g0460 657 SMART bright_3 209 300 IPR001606 GO:0003677(InterPro)
Lcy13g0460 657 MobiDBLite consensus disorder prediction 412 452 - -
Lcy13g0460 657 SUPERFAMILY ARID-like 204 311 IPR036431 GO:0003677(InterPro)
Lcy13g0460 657 Pfam HMG (high mobility group) box 443 510 IPR009071 -
Lcy13g0460 657 FunFam High mobility group B protein 15 202 314 - -
Lcy13g0460 657 Gene3D High mobility group box domain 427 522 IPR036910 -
Lcy13g0460 657 Coils Coil 565 591 - -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 637 657 - -
Lcy13g0460 657 Coils Coil 492 512 - -
Lcy13g0460 657 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 184 572 - -
Lcy13g0460 657 SUPERFAMILY HMG-box 436 515 IPR036910 -
Lcy13g0460 657 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 443 510 IPR009071 -
Lcy13g0460 657 SMART ARID_2 205 295 - -
Lcy13g0460 657 CDD HMG-box_AtHMGB9-like 443 509 - -
Lcy13g0460 657 FunFam High mobility group B protein 15 425 520 - -
Lcy13g0460 657 CDD ARID_HMGB9-like 210 295 IPR045303 GO:0003677(InterPro)
Lcy13g0460 657 ProSiteProfiles ARID domain profile. 208 299 IPR001606 GO:0003677(InterPro)
Lcy13g0460 657 SMART hmgende2 442 511 IPR009071 -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 543 657 - -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 423 437 - -
Lcy13g0460 657 MobiDBLite consensus disorder prediction 569 590 - -
Lcy13g0460 657 Pfam ARID/BRIGHT DNA binding domain 211 295 IPR001606 GO:0003677(InterPro)
Lcy13g0460 657 Gene3D - 201 302 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0460 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0460 Lcy-Chr13:5509030 Lcy9g2296 Lcy-Chr9:47361510 3.21E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g0460 . 174 540 ARID Transcription Factor Family AT1G04880 57.0 5.0e-107 385.6
Lcy9g2358 . 384 628 ARID Transcription Factor Family AT1G20910 50.2 1.2e-64 244.6
Lcy9g2296 . 16 309 ARID Transcription Factor Family AT1G76110 67.4 2.0e-111 399.8
Lcy13g0075 . 2 772 ARID Transcription Factor Family AT3G43240 59.5 3.7e-264 908.3
Lcy3g2277 . 5 396 ARID Transcription Factor Family AT3G43240 53.5 3.2e-114 410.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19359 None None None None Lcy TR