Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0462 ATGGAGGATCAATTCCCTCTGATAGAACAACAAAAAAACATCATTCAAAAGGATTTTTCATCTTCTTCTTCTTCTTCTTTTCAAGAATTGGTCTCTGGATCTTACTTTTATGGCGATCCAATTCTCTGGGGCTCCATAGCTCGAGCTTCAAGGTCTGAAAATGGCGGGTCTTCTAATGGCAATGATCAATCGAAATCTCCATCTTCTTCTTCCTCTTCTTCTCCCAATTCCCCTTCTTCTTCTTCTTCGTCTTTTCGACTGCTTTCGGGTGAAAAATCTGAGATTTCTGGTGGGAATTTGATCGAGAGCTTTTGTGGGATTAGAAAATTTGAAAGTAATCTTCACCCAGATGGAGATAGGTTCGTTCCCGTGAATTTCTTGGAGGCTTTTCCCAAACAAGAATCTGAGTCTCTTTCTTCTCCAACTCTGTTTCAATCTCGAACGGATTCAACGAATCTGACTCTGTTTTTGCAAGAACCTGCAATTGTTGATCCATCTCCTCGAAACCCATTTCAAATTCAAGCTCAAACGGGTCTCCAATGGCTGAAAAACAACCAGAATCAGAACCAAGCCGCCGCCATTGCTGCCGCTGTGTCGAGAAATTACAGCGATTTCTGGCTGGGGGCGACGAAGACGCAGCCGATGAAACAGAGTGGGAGAAAACAGGGGAATCTCAAAACAGAGTCGCCGGCGACAGCGACGACGGCCGGAAAGTTGTTTAGAGGCGTCCGGCAGCGGCACTGGGGGAAATGGGTGGCGGAGATTCGGCTGCCGAGGAACCGGACGAGGGTCTGGCTCGGGACCTTCGACACTGCCGTTGAAGCCGCCGTCGCCTACGACACTGCCGCCTATATGCTGAGGGGGGAATTCGCACATTTGAATTTTCCCGACCAGAAACACCGTCTAAAATCCAACTCCCTCAACCGGACCACGGCGGCGCTGCTGGAGGCAAAGTTGCAGGCGATCACGCAGGGGAATTCCGGTAGAAAAAAAACCACCACCGCCACCGCCACCACCGCAGCAACCGCCATTGATTCAACTCCTTCAGAGAAGGGACTACTGCAGGGAGATTCAAAAGTTTTGAACTTGAGCCAGAACCCGGCGAGGTTTTCACCGGAAAACATGTCGGGTGGCGGCGGTGGCGGCGGCGGATCGGAAATGGGGGATTTAAAGAGAAACCCGGATGGAAATTTTGAGATAGAACAACATGTTCAGCTAAGCAGAATGCCATCTTTGGACATGGATATGATTTGGGATGCTCTGTTAGTTTCTGAATCATAA 1281 48.95 MEDQFPLIEQQKNIIQKDFSSSSSSSFQELVSGSYFYGDPILWGSIARASRSENGGSSNGNDQSKSPSSSSSSSPNSPSSSSSSFRLLSGEKSEISGGNLIESFCGIRKFESNLHPDGDRFVPVNFLEAFPKQESESLSSPTLFQSRTDSTNLTLFLQEPAIVDPSPRNPFQIQAQTGLQWLKNNQNQNQAAAIAAAVSRNYSDFWLGATKTQPMKQSGRKQGNLKTESPATATTAGKLFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAVEAAVAYDTAAYMLRGEFAHLNFPDQKHRLKSNSLNRTTAALLEAKLQAITQGNSGRKKTTTATATTAATAIDSTPSEKGLLQGDSKVLNLSQNPARFSPENMSGGGGGGGGSEMGDLKRNPDGNFEIEQHVQLSRMPSLDMDMIWDALLVSES 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5524487 5525767 - Maker00023249 Lcy13g0462 650767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0462 426 Gene3D AP2/ERF domain 239 297 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0462 426 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0462 426 PRINTS Ethylene responsive element binding protein signature 262 278 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0462 426 CDD AP2 238 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0462 426 MobiDBLite consensus disorder prediction 50 88 - -
Lcy13g0462 426 Pfam AP2 domain 240 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0462 426 SMART rav1_2 239 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0462 426 MobiDBLite consensus disorder prediction 367 395 - -
Lcy13g0462 426 ProSiteProfiles AP2/ERF domain profile. 239 296 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0462 426 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 52 421 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy13g0462 426 FunFam Ethylene-responsive transcription factor 2 238 297 - -
Lcy13g0462 426 SUPERFAMILY DNA-binding domain 239 297 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0462 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0462 Lcy-Chr13:5524487 Lcy13g1578 Lcy-Chr13:34614837 6.52E-32 dispersed
Lcy12g1572 Lcy-Chr12:35792480 Lcy13g0462 Lcy-Chr13:5524487 9.84E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g903 . . Bda03g01124 Bda08g00035 . . . Bma05g01291 Cmo08g00995 . . . . . . . . . . . . . . . Cla06g00758 Cam06g0808 Cec06g0821 Cco06g0826 Clacu06g0810 Cmu06g0784 Cre06g1562 . . Cone7ag0394 . . . Chy05g00558 . . . . . Bpe05g01141 . . . Sed04g2065 . . Cma08g01023 . Car08g00900 . . . Bhi12g01500 Tan06g2302 Cmetu05g0661 Lac12g2046 Hepe03g0358 . Lcy13g0462 . . . . . . . Lsi09g01142 . . Cme05g00716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008409 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19360 None None None None Lcy TF