Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0466 ATGGCCACACTCCTTCTCTCCCACTCCTTCCTCTTCCTCCTCCTCCTCCTCTCCGGAGCCACCGCTGTCGACGGCGCGTACTGGTGCGTGGCCCGCAGCGAGGCGAGCTACGAGGCGCTGCAGACGGCGCTGGACTACGCCTGCGCCACCGGCGCCGACTGCGCTCCGATTCAGTCGAACGGGCTGTGCTTCCTCCCCAACACCATCCAGGCCCACGCCTCCTACGCCTTCAACAGCTTCTTCCAACGCAAGGCCATGGCCCCCGGCTCCTGCGACTTCGCCGCCTCCGCCACCATCGCCCAGTCCGACCCCAGTTATGGATCTTGTGTTTATCCTTCTTCTATCAGTGCTGCAGGAGGAGCAATCACACCCAGCCCTCCATCAAACGCAAGCCCGACGATAACAGTGCCAGCTACAACCCCCACCACACCGAGCTTCAACAACGGCGGTACCGATGATGTGAATGGTCTAAATCCAGTATACAACCCGACATCAACCTCAACACCAACCAACTCTAAAGCCTCATCGAGTTTTACGATCCCGAAACTCTTAATCTTCGTCTTGTTTTCAATTGCTATCTCACTCACTTCACAAACAATGTAG 603 57.71 MATLLLSHSFLFLLLLLSGATAVDGAYWCVARSEASYEALQTALDYACATGADCAPIQSNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAASATIAQSDPSYGSCVYPSSISAAGGAITPSPPSNASPTITVPATTPTTPSFNNGGTDDVNGLNPVYNPTSTSTPTNSKASSSFTIPKLLIFVLFSIAISLTSQTM 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5562947 5567402 + Maker00023730 Lcy13g0466 650771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0466 200 Pfam X8 domain 28 98 IPR012946 -
Lcy13g0466 200 SMART X8_cls 27 111 IPR012946 -
Lcy13g0466 200 FunFam glucan endo-1,3-beta-glucosidase 7 23 112 - -
Lcy13g0466 200 Gene3D - 21 117 - -
Lcy13g0466 200 PANTHER BETA-1,3 GLUCANASE 12 114 IPR044788 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0466 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0466 Lcy-Chr13:5562947 Lcy2g2380 Lcy-Chr2:50177940 1.39E-26 dispersed
Lcy13g0466 Lcy-Chr13:5562947 Lcy6g1572 Lcy-Chr6:26671021 1.39E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g906 . Blo12g00115 Bda03g01126 . . . Bma04g01055 . Cmo08g00991 . . . . . . . . . . . . . . . Cla06g00760 . Cec06g0822 . Clacu06g0812 Cmu06g0786 . . . . . . . Chy05g00560 . . . . . . . . . Sed04g2068 . . Cma08g01021 . Car08g00898 . . Cpe17g00255 Bhi12g01498 Tan06g2300 Cmetu05g0712 Lac12g2044 Hepe03g0359 . Lcy13g0466 . . . . . . . Lsi09g01139 . . Cme05g00718
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009076 1 1 1 1 0 1 1 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34