Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0471 ATGGGTAAGGAAAAGATTCACATCAACATCGTGGTTATTGGCCATGTCGACTCTGGAAAGTCGACCACCACTGGTCACCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAGCGTGGTATTACCATTGACATTGCTCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATCGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCACAGGCTGACTGTGCCGTCCTCATTATTGACTCCACCACTGGTGGTTTCGAAGCTGGTATTTCTAAGGATGGTCAGACCCGTGAGCACGCTCTCCTTGCTTTTACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGGTTGATACGCTCATATGTTTTATGGATGCCACCACTCCCAAATACTCCAAGGCAAGGTATGATGAAATCGTCAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCCTTCGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATTTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATCGGTGGTATTGGAACTGTCCCTGTCGGTCGTGTTGAAACTGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTCGGACCAACTGGACTGACCACTGAAGTTAAGTCCGTTGAAATGCATCACGAGTCTCTCCCAGAGGCCTTACCTGGTGACAACGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTCGCCTCCAACTCCAAGGATGACCCGGCCAAGGAGGCTGCCAACTTCACATCTCAGGTTATCATCATGAACCACCCTGGCCAGATCGGTAATGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCCGTTAAGTTTGCCGAGATCCTCACCAAGATCGATCGTCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCCGGTATGGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAGACTTTCTCCTCGTACCCACCATTGGGTCGTTTCGCCGTTCGTGACATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACTGGAGCCAAGGTGACCAAGTCCGCTGTCAAGAAGAAATAA 1365 49.67 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKVDTLICFMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5589382 5591540 - Maker00023238 Lcy13g0471 650776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0471 454 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 237 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g0471 454 Hamap Elongation factor Tu [tuf]. 2 439 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Lcy13g0471 454 FunFam Elongation factor 1-alpha 1 233 - -
Lcy13g0471 454 FunFam Elongation factor 1-alpha 330 437 - -
Lcy13g0471 454 NCBIfam translation elongation factor EF-1 subunit alpha 1 440 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Lcy13g0471 454 Pfam GTP-eEF1A C-terminal domain-like 334 434 IPR054696 -
Lcy13g0471 454 CDD EF1_alpha_III 330 433 - -
Lcy13g0471 454 Gene3D Translation factors 236 323 - -
Lcy13g0471 454 PANTHER TRANSLATION FACTOR 4 434 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Lcy13g0471 454 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lcy13g0471 454 SUPERFAMILY Translation proteins 238 328 IPR009000 -
Lcy13g0471 454 Pfam Elongation factor Tu domain 2 255 320 IPR004161 GO:0005525(InterPro)
Lcy13g0471 454 Gene3D - 1 235 IPR027417 -
Lcy13g0471 454 FunFam Elongation factor 1-alpha 236 323 - -
Lcy13g0471 454 Pfam Elongation factor Tu GTP binding domain 6 228 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g0471 454 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g0471 454 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g0471 454 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g0471 454 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g0471 454 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g0471 454 Gene3D Translation factors 330 437 - -
Lcy13g0471 454 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 333 436 IPR009001 -
Lcy13g0471 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 256 IPR027417 -
Lcy13g0471 454 CDD EF1_alpha 9 234 - -
Lcy13g0471 454 CDD EF1_alpha_II 237 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1782 Lcy-Chr10:42182580 Lcy13g0471 Lcy-Chr13:5589382 4.28e-319 dispersed
Lcy13g0471 Lcy-Chr13:5589382 Lcy9g1784 Lcy-Chr9:42997900 3.85E-89 dispersed
Lcy13g0471 Lcy-Chr13:5589382 Lcy8g1885 Lcy-Chr8:45144757 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0471 K03231 - csv:101215193 866.3