Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0471 | ATGGGTAAGGAAAAGATTCACATCAACATCGTGGTTATTGGCCATGTCGACTCTGGAAAGTCGACCACCACTGGTCACCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAGCGTGGTATTACCATTGACATTGCTCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATCGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCACAGGCTGACTGTGCCGTCCTCATTATTGACTCCACCACTGGTGGTTTCGAAGCTGGTATTTCTAAGGATGGTCAGACCCGTGAGCACGCTCTCCTTGCTTTTACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGGTTGATACGCTCATATGTTTTATGGATGCCACCACTCCCAAATACTCCAAGGCAAGGTATGATGAAATCGTCAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCCTTCGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATTTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATCGGTGGTATTGGAACTGTCCCTGTCGGTCGTGTTGAAACTGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTCGGACCAACTGGACTGACCACTGAAGTTAAGTCCGTTGAAATGCATCACGAGTCTCTCCCAGAGGCCTTACCTGGTGACAACGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTCGCCTCCAACTCCAAGGATGACCCGGCCAAGGAGGCTGCCAACTTCACATCTCAGGTTATCATCATGAACCACCCTGGCCAGATCGGTAATGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCCGTTAAGTTTGCCGAGATCCTCACCAAGATCGATCGTCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCCGGTATGGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAGACTTTCTCCTCGTACCCACCATTGGGTCGTTTCGCCGTTCGTGACATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACTGGAGCCAAGGTGACCAAGTCCGCTGTCAAGAAGAAATAA | 1365 | 49.67 | MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKVDTLICFMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5589382 | 5591540 | - | Maker00023238 | Lcy13g0471 | 650776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0471 | 454 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 237 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy13g0471 | 454 | Hamap | Elongation factor Tu [tuf]. | 2 | 439 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
Lcy13g0471 | 454 | FunFam | Elongation factor 1-alpha | 1 | 233 | - | - | |
Lcy13g0471 | 454 | FunFam | Elongation factor 1-alpha | 330 | 437 | - | - | |
Lcy13g0471 | 454 | NCBIfam | translation elongation factor EF-1 subunit alpha | 1 | 440 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
Lcy13g0471 | 454 | Pfam | GTP-eEF1A C-terminal domain-like | 334 | 434 | IPR054696 | - | |
Lcy13g0471 | 454 | CDD | EF1_alpha_III | 330 | 433 | - | - | |
Lcy13g0471 | 454 | Gene3D | Translation factors | 236 | 323 | - | - | |
Lcy13g0471 | 454 | PANTHER | TRANSLATION FACTOR | 4 | 434 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
Lcy13g0471 | 454 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
Lcy13g0471 | 454 | SUPERFAMILY | Translation proteins | 238 | 328 | IPR009000 | - | |
Lcy13g0471 | 454 | Pfam | Elongation factor Tu domain 2 | 255 | 320 | IPR004161 | GO:0005525(InterPro) | |
Lcy13g0471 | 454 | Gene3D | - | 1 | 235 | IPR027417 | - | |
Lcy13g0471 | 454 | FunFam | Elongation factor 1-alpha | 236 | 323 | - | - | |
Lcy13g0471 | 454 | Pfam | Elongation factor Tu GTP binding domain | 6 | 228 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy13g0471 | 454 | PRINTS | GTP-binding elongation factor signature | 148 | 157 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy13g0471 | 454 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy13g0471 | 454 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy13g0471 | 454 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy13g0471 | 454 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lcy13g0471 | 454 | Gene3D | Translation factors | 330 | 437 | - | - | |
Lcy13g0471 | 454 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 333 | 436 | IPR009001 | - | |
Lcy13g0471 | 454 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 256 | IPR027417 | - | |
Lcy13g0471 | 454 | CDD | EF1_alpha | 9 | 234 | - | - | |
Lcy13g0471 | 454 | CDD | EF1_alpha_II | 237 | 327 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1782 | Lcy-Chr10:42182580 | Lcy13g0471 | Lcy-Chr13:5589382 | 4.28e-319 | dispersed | |
Lcy13g0471 | Lcy-Chr13:5589382 | Lcy9g1784 | Lcy-Chr9:42997900 | 3.85E-89 | dispersed | |
Lcy13g0471 | Lcy-Chr13:5589382 | Lcy8g1885 | Lcy-Chr8:45144757 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0471 | K03231 | - | csv:101215193 | 866.3 |