Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0472 ATGGCGGGCCTATCGCTCAAGTGCGGCGATTGTGGCGCACTCTTGAGATCCGTTGAAGAAGCTCAAGAGCACGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAGGCTGTGCTCAATCTCGTCTGTGCTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAACGGACTGGCCACACTGAGTTTACTGATAAGACTTTGGAGGCTGCAAAACCGATAAGCTTGGAGGCCCCGAAGGTAGCTGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGTAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAATATATTAGAGAAACTTGAAGCTATGGGCTTCCCAACAGCACGAGCAACCCGTGCACTTTATTATTCTGGTAATGTCAGTCTTGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGATCAAATGCCTTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACGTCTGAGCAACTGAAAGCAAAACAGCAGGAGCTAAGGGAACGGGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGATAGCAGAGAGAGAAAGGGAAAAGGAGAGAATCCGAATTGGCAAGGAGCTTCTAGAAGCAAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCGACTGCAAAACCTGCAGCACCTGTTGTTGAAGAGAAAAAGATCTCATTGCCGGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGCTTGCGATCTTTAAAGTCCAATCACAAGGAGGATGATGCCAAAGTGAAGAGAGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGCAAAAAATCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGGGGAATTGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGTGGTGAGTTCTTGTTTCTGCCCAGGGACAAGGTTGACAGAGCAGTGCTCAATTCAGCTGGCTCTGAGCTGGATTCTGCAATAAAGAATCCCTTCTTTGGTGTTCTCTAA 1236 46.28 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLVCAACGKPCRSKTESDLHTKRTGHTEFTDKTLEAAKPISLEAPKVAAESEDGGDASASKSEEMVVPEVNKNILEKLEAMGFPTARATRALYYSGNVSLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTSEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPAAPVVEEKKISLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5611674 5620648 + Maker00023457 Lcy13g0472 650777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0472 411 Pfam PUB domain 318 389 IPR018997 -
Lcy13g0472 411 Coils Coil 178 215 - -
Lcy13g0472 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Lcy13g0472 411 MobiDBLite consensus disorder prediction 85 105 - -
Lcy13g0472 411 MobiDBLite consensus disorder prediction 253 270 - -
Lcy13g0472 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Lcy13g0472 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Lcy13g0472 411 Gene3D - 303 401 - -
Lcy13g0472 411 SMART PGNneu 321 384 - -
Lcy13g0472 411 MobiDBLite consensus disorder prediction 253 279 - -
Lcy13g0472 411 Pfam UBA-like domain 112 159 IPR015940 -
Lcy13g0472 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515(InterPro)
Lcy13g0472 411 CDD PUB_UBA_plant 305 411 - -
Lcy13g0472 411 CDD UBA_PUB_plant 110 158 - -
Lcy13g0472 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Lcy13g0472 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lcy13g0472 411 MobiDBLite consensus disorder prediction 183 207 - -
Lcy13g0472 411 Coils Coil 224 261 - -
Lcy13g0472 411 Gene3D - 113 157 - -
Lcy13g0472 411 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0472 Lcy-Chr13:5611674 Lcy4g1679 Lcy-Chr4:42447118 7.46E-73 dispersed
Lcy13g0472 Lcy-Chr13:5611674 Lcy3g0580 Lcy-Chr3:21823993 3.25E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0472 K24348 - csv:101215434 685.256