Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0510 ATGTATGAAGAAACTGCCTGTTCTGACCCCAATTCCATGTCAGCCGAAGCTACAGCGCCTGTACGAGATGCTTCAGAAAATGGGTTTCCTCCTACAAAGGCGCATATCGCCGCTTTGCCTTCTTTTCCTCCGCCGCTCATCGCCGGTGGTGCTGGTCAAGAAGCCCATGGCAGTTTTGATGAGAATCTCATTCTTTCCATGGAGGAACTTTCTTATCACCACCACCACCGCGGCGGCGGTGGAGACGCCATGGAACTTGAGTTCCAGCAGCAAGCAGCGGCAGCGGCGGGGTTTGATAACAATAATGTTAACCCTAATTTTGGTCAGGAAGTAACTTCTGATTCGAACAGGATGGTGTGTTTTGATCAATCCAGTTGGGTTGGGACACAAATTCAAGAAATGGGGTTTAATCACAACCACCATCAGATTCAATCTCAAGATCAGTTTTCAGAATCCGCCATGGCCGCCGCCTATACTCAAGCTCCGGACCTCTTGAACTTCTTCAACATGCCGGCGGCCAGAGGCTCGAACTCTTCCATCTCCTTCTCCAACACGATCTCGAGCCTCCACAGTTCCGCCGTGGGAGGGTTTCTTGCAGACCTTCCCGCCGGCGACGGCGGTGGCAACCCATCGTCGACCTCGCTTTCTATACTCTACGACCCTCTGTTCCACCTGAATCTGCCGCCGCAGCCGCCATTGTTTAGGGAGCTGTTTCACTCTCTTCCACATGGTTACGGTCTGCCGGCGGCGAGATCAAGAGGCCGGGGAGGGAATCTGTTCCCGGAGGGGGAGATGGAGAGAGAAGGAACCGCCGGAGTTTATGAAGACGGCGATGGGAGTGGAGTTTTGGAGTTCAGCAGGGATATGGCGGATTGTATTGGGAAAGGGAGAGATGGGAAAATGACTAAACATTATGTCACTGAACGCGAAAGGAGAGAGCAATTGAGGGACAAATATAAAGATCTGAGGAATTTGGTTCCTAATCCAACTAAGACAGATAGGGCATCAATTGTGGGAGACGCCATAGAATACATCAAAGAGCTTCTAAGAACAGTGAAGGAACTGAAACTACTGGTGGAGAAGAAGCGATGCAGCAGAGAGAGGAGCAAGAGGCACCGGACGGCGGAGGAAGACGGCGGCGCGTGGGATGTAGAGAGCTCAAATGCGAAGCCAGCTGTTGTGGGAGACGCCGCAGAGGATCAGAGCTACAACTTGAGAAGCTCGTGGCTGCAGAGGAAGACCAAAGACACTGAAGTTGATGTTCGAATCATTGACGATGAAGTGACCATCAAGCTTGTGCAGCGCAAAGTCAACTGCTTGTTGCTTGTTTCCAAATTGCTAGACGATCTTCAGCTTGATCTTCACCATGTCGCCGGTGGCCATATCGGTGATTACTACAGTTTCTTGTTCAATACCAAGATATATGAAGGTTCATCAGTATATGCAAGTGCCATAGCCAACAAGGTGATAGAAGCAGTGGACAGACAGTACAACAACACATCCACTACTCCACACACCAATAGCTATTAA 1530 50.46 MYEETACSDPNSMSAEATAPVRDASENGFPPTKAHIAALPSFPPPLIAGGAGQEAHGSFDENLILSMEELSYHHHHRGGGGDAMELEFQQQAAAAAGFDNNNVNPNFGQEVTSDSNRMVCFDQSSWVGTQIQEMGFNHNHHQIQSQDQFSESAMAAAYTQAPDLLNFFNMPAARGSNSSISFSNTISSLHSSAVGGFLADLPAGDGGGNPSSTSLSILYDPLFHLNLPPQPPLFRELFHSLPHGYGLPAARSRGRGGNLFPEGEMEREGTAGVYEDGDGSGVLEFSRDMADCIGKGRDGKMTKHYVTERERREQLRDKYKDLRNLVPNPTKTDRASIVGDAIEYIKELLRTVKELKLLVEKKRCSRERSKRHRTAEEDGGAWDVESSNAKPAVVGDAAEDQSYNLRSSWLQRKTKDTEVDVRIIDDEVTIKLVQRKVNCLLLVSKLLDDLQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYASAIANKVIEAVDRQYNNTSTTPHTNSY 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6295041 6298682 + Maker00023343 Lcy13g0510 650815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0510 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983(InterPro)
Lcy13g0510 509 MobiDBLite consensus disorder prediction 1 33 - -
Lcy13g0510 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 363 IPR036638 GO:0046983(InterPro)
Lcy13g0510 509 SMART finulus 305 354 IPR011598 GO:0046983(InterPro)
Lcy13g0510 509 PANTHER TRANSCRIPTION FACTOR BHLH91 1 500 IPR045895 GO:0006355(InterPro)|GO:0048658(InterPro)
Lcy13g0510 509 Gene3D - 295 368 IPR036638 GO:0046983(InterPro)
Lcy13g0510 509 CDD bHLH_AtMYC1_like 304 370 IPR045896 -
Lcy13g0510 509 Coils Coil 305 325 - -
Lcy13g0510 509 Pfam Helix-loop-helix DNA-binding domain 302 348 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0510 Lcy-Chr13:6295041 Lcy7g0177 Lcy-Chr7:1575147 2.85E-09 dispersed
Lcy13g0509 Lcy-Chr13:6281553 Lcy13g0510 Lcy-Chr13:6295041 4.32e-316 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19363 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0510 - - - 0.0