Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g0539 | ATGGACGCGGCGGTGCTCGCGGCGGTGCTGGCAGCTGCAGCGGCGGCGGCTGTCTGGGTCTTGAAGAATGCGAACCGGTGGGTCTACGAAACCGCCCGGTTGGGTTCGAAACGGTTCGCCCTGCCGCCCGGGGATCTCGGCTGGCCGTTCATCGGCAATATGTGGTCTTTTCTCCGAGCTTTCAAGTCTTCTCATCCTGATTCTTTCATGGACTCCTTCGTCTCCAGGTATGGACAGACAGGAATGTACAAGGCTTTGATGTTTGGAAGTCCAAGTGTGATAGTGACTTCAGCAGAAGCCTGCAAAAGAGTTTTGAACGACGATGAAGCCTTTGGCCCAGGGTGGCCTCGTTCCACCATGAAACTCATCGGAGAAAATTCCTTCATCGGCATTTCTTACCAAGAACACAAGCGTCTCCGTCGCATAACGGCTGCTCCTGTCAATGGCTACGAGGCCCTGTCCACCTACCTCACCTACATCGAAAACATTGTGCTTGCTTCCTTGCAAAAATGGCCTTCCATGGGACAGATCCAGTTCTTGACTGAGCTGCGTAAGCTTACCTTCAAGATCATCATGTACATTTTCCTTAGCTCTGAGAGCGAGCCTGTCATGGAGGCCTTGGAGAGGGAGTACACGTCCTTGAACTATGGCGTCAGAGCTATGGCTATCGACGTTCCCGGTTTCGCTTACCATAAAGCACTCAAGGCACGAAAGAATCTTGTGGCGACGTTTCAATCGATCGTGAGTGAGCGAAGGAAGGAAAGAGAGAGCAATTTGGCAACAAAGCGAAGAGATATGATGGATTCTTTGCTAGATGCTGAAGATGAGAATGGTAGAAGGTTGAGTGATGAAGAAATTATTGATGTCTTGATAATGTACTTGAATGCAGGCCATGAATCTTCAGGTCACACTATGATGTGGGCAACAATTTTCTTGCAACAACATCCCCAATTCCTTGAAAAGGCCAAGGCAGAGCAAGAAGAGGTACTAAGGAAGCGACCTCCCGGCCAAAAGGGTTTAACTTTGAAGGAAATTCGAGAAATGGACTATCTTTCGAAGGTGATCGATGAAACTCTACGAGTGGTAACATTCTCACTCACTGTTTTTCGAGAGGCAAAGCATGATGTCAACATTAGTGGTTATACCATTCCAAAAGGTTGGAAAGTGCTAGTTTGGTTTAGAAGTGTTCACTACGATCCCGAAACTTATCCGAACCCGAAAGAATTTGATCCTTCAAGATGGGATGATTTTACACCAAAAGCAGGAAGCTTTCTTCCATTCGGAGCGGGAAGTAGATTATGTCCTGGAAATGATCTAGCGAAGTTGGAAATCTCCATCTTTCTCCACTATTTTCTCCTCAATTATCGGTTGGAAAGGGATAATCCAAAAAGTCCAGTGAGGTATCTACCCCATTCAAGGCCTAAAGATAACTGTTTGGCAAGGATCAAGAGAGTTGGTGCTCCACTTGATTGA | 1473 | 47.32 | MDAAVLAAVLAAAAAAAVWVLKNANRWVYETARLGSKRFALPPGDLGWPFIGNMWSFLRAFKSSHPDSFMDSFVSRYGQTGMYKALMFGSPSVIVTSAEACKRVLNDDEAFGPGWPRSTMKLIGENSFIGISYQEHKRLRRITAAPVNGYEALSTYLTYIENIVLASLQKWPSMGQIQFLTELRKLTFKIIMYIFLSSESEPVMEALEREYTSLNYGVRAMAIDVPGFAYHKALKARKNLVATFQSIVSERRKERESNLATKRRDMMDSLLDAEDENGRRLSDEEIIDVLIMYLNAGHESSGHTMMWATIFLQQHPQFLEKAKAEQEEVLRKRPPGQKGLTLKEIREMDYLSKVIDETLRVVTFSLTVFREAKHDVNISGYTIPKGWKVLVWFRSVHYDPETYPNPKEFDPSRWDDFTPKAGSFLPFGAGSRLCPGNDLAKLEISIFLHYFLLNYRLERDNPKSPVRYLPHSRPKDNCLARIKRVGAPLD | 490 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6738728 | 6747856 | + | Maker00023696 | Lcy13g0539 | 650844 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g0539 | 490 | CDD | CYP90-like | 74 | 484 | - | - | |
| Lcy13g0539 | 490 | PRINTS | P450 superfamily signature | 353 | 364 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | PRINTS | P450 superfamily signature | 296 | 313 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | PRINTS | P450 superfamily signature | 434 | 445 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | PRINTS | P450 superfamily signature | 425 | 434 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | FunFam | Ent-kaurenoic acid oxidase | 32 | 485 | - | - | |
| Lcy13g0539 | 490 | PRINTS | E-class P450 group I signature | 434 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | PRINTS | E-class P450 group I signature | 392 | 416 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | PRINTS | E-class P450 group I signature | 305 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | PRINTS | E-class P450 group I signature | 424 | 434 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | PANTHER | CYTOCHROME P450 26 | 40 | 462 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Lcy13g0539 | 490 | Pfam | Cytochrome P450 | 42 | 463 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 427 | 436 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy13g0539 | 490 | SUPERFAMILY | Cytochrome P450 | 36 | 483 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0539 | 490 | Gene3D | Cytochrome P450 | 31 | 485 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g1923 | Lcy-Chr12:40529280 | Lcy13g0539 | Lcy-Chr13:6738728 | 1.92E-164 | dispersed | |
| Lcy13g0539 | Lcy-Chr13:6738728 | Lcy6g2199 | Lcy-Chr6:46203021 | 5.82E-147 | dispersed | |
| Lcy11g1848 | Lcy-Chr11:42285142 | Lcy13g0539 | Lcy-Chr13:6738728 | 3.41E-244 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g0539 | K04123 | - | csv:101220640 | 818.535 |