Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0544 | ATGGATACTTTAAACTTAGGCTCCGCCTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACTTAGAAACGCCGCCAAATTCCGACCATGTCACCAATCTCAACCACTTCAACGGCGGCAGCGGCTCTGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCAAGGGGCCGCCCGGCCGGCTCCAAGAACAAGCCGAAGCCCCCCGTGATCATCACGCGCGAGAGCGCCAACACGCTCCGAGCTCATATCTTGGAGGTCGGTGGCGGCTGCGACGTGTTCGAGGCGGTGGCTGGCTACGCGCGACGGCGACAACGGGGGATCTGTGTTTTGAGTGGGAGTGGGATAGTGAATAATGTTAGCTTGCGGCAGCCAACGGCGGCGGGATCGGTGTTGACGCTCCAAGGGAGGTTTGAGATTTTGTCGTTGTCGGGATCTTTCTTGCCTCCGCCTGCTCCACCTGGTGCTACCAGTCTCACGATCTTCTTAGCCGGAGGACAAGGACAGGTGGTTGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCGGTCATCGTCATTGCATCGTCGTTTAGCAACGTTGCGTACGAGAGGTTGCCGTTGGACGAAGAAGAATTGCCGATGCAGGCGGGTGGCGACGGGGACGGAGGCGACGATGGCGGCGACAACCACAACAACCCTTTCCCGGATGCATCTTCCGGCTTGCCCTTTCTTAACCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA | 765 | 58.17 | MDTLNLGSASHFVDQLQQRPDLHLETPPNSDHVTNLNHFNGGSGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPTAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGDGDGGDDGGDNHNNPFPDASSGLPFLNLPMNMPNQNQFFG | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6867866 | 6869191 | - | Maker00023970 | Lcy13g0544 | 650849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0544 | 254 | MobiDBLite | consensus disorder prediction | 36 | 70 | - | - | |
Lcy13g0544 | 254 | CDD | DUF296 | 82 | 165 | IPR005175 | - | |
Lcy13g0544 | 254 | PIRSF | ESCAROLA | 3 | 253 | IPR014476 | GO:0003680(InterPro) | |
Lcy13g0544 | 254 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 82 | 194 | IPR005175 | - | |
Lcy13g0544 | 254 | ProSiteProfiles | PPC domain profile profile. | 78 | 214 | IPR005175 | - | |
Lcy13g0544 | 254 | MobiDBLite | consensus disorder prediction | 208 | 242 | - | - | |
Lcy13g0544 | 254 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 78 | 211 | - | - | |
Lcy13g0544 | 254 | FunFam | AT-hook motif nuclear-localized protein | 81 | 208 | - | - | |
Lcy13g0544 | 254 | Gene3D | - | 81 | 212 | - | - | |
Lcy13g0544 | 254 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 41 | 217 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1939 | Lcy-Chr12:40759154 | Lcy13g0544 | Lcy-Chr13:6867866 | 5.77E-92 | dispersed | |
Lcy13g0544 | Lcy-Chr13:6867866 | Lcy6g2215 | Lcy-Chr6:46493877 | 3.51E-94 | dispersed | |
Lcy11g1856 | Lcy-Chr11:42349531 | Lcy13g0544 | Lcy-Chr13:6867866 | 9.60E-109 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0544 | - | - | - | 0.0 |