Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0544 ATGGATACTTTAAACTTAGGCTCCGCCTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACTTAGAAACGCCGCCAAATTCCGACCATGTCACCAATCTCAACCACTTCAACGGCGGCAGCGGCTCTGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCAAGGGGCCGCCCGGCCGGCTCCAAGAACAAGCCGAAGCCCCCCGTGATCATCACGCGCGAGAGCGCCAACACGCTCCGAGCTCATATCTTGGAGGTCGGTGGCGGCTGCGACGTGTTCGAGGCGGTGGCTGGCTACGCGCGACGGCGACAACGGGGGATCTGTGTTTTGAGTGGGAGTGGGATAGTGAATAATGTTAGCTTGCGGCAGCCAACGGCGGCGGGATCGGTGTTGACGCTCCAAGGGAGGTTTGAGATTTTGTCGTTGTCGGGATCTTTCTTGCCTCCGCCTGCTCCACCTGGTGCTACCAGTCTCACGATCTTCTTAGCCGGAGGACAAGGACAGGTGGTTGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCGGTCATCGTCATTGCATCGTCGTTTAGCAACGTTGCGTACGAGAGGTTGCCGTTGGACGAAGAAGAATTGCCGATGCAGGCGGGTGGCGACGGGGACGGAGGCGACGATGGCGGCGACAACCACAACAACCCTTTCCCGGATGCATCTTCCGGCTTGCCCTTTCTTAACCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA 765 58.17 MDTLNLGSASHFVDQLQQRPDLHLETPPNSDHVTNLNHFNGGSGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPTAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGDGDGGDDGGDNHNNPFPDASSGLPFLNLPMNMPNQNQFFG 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6867866 6869191 - Maker00023970 Lcy13g0544 650849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0544 254 MobiDBLite consensus disorder prediction 36 70 - -
Lcy13g0544 254 CDD DUF296 82 165 IPR005175 -
Lcy13g0544 254 PIRSF ESCAROLA 3 253 IPR014476 GO:0003680(InterPro)
Lcy13g0544 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Lcy13g0544 254 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
Lcy13g0544 254 MobiDBLite consensus disorder prediction 208 242 - -
Lcy13g0544 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 211 - -
Lcy13g0544 254 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Lcy13g0544 254 Gene3D - 81 212 - -
Lcy13g0544 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 217 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1939 Lcy-Chr12:40759154 Lcy13g0544 Lcy-Chr13:6867866 5.77E-92 dispersed
Lcy13g0544 Lcy-Chr13:6867866 Lcy6g2215 Lcy-Chr6:46493877 3.51E-94 dispersed
Lcy11g1856 Lcy-Chr11:42349531 Lcy13g0544 Lcy-Chr13:6867866 9.60E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0544 - - - 0.0