Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0545 ATGGCGGAATTTCTCGATTTGGAAGCACAGGACGGTGTCCGGATGCCGTGGAATGTGGTGCCCGGGACCAAGCAAGAAGCTAGCAACTGTATAGTTCCAGTTTCCGCCATGTACACGCCGATCAAAGCCTTTCCGAACATGCCGGTGCTACCTTACTCTCCGCTTCGATGTCGTACTTGTCGCTCTATTCTCAATCCGTTTTCCATTGTTGATTTCGCTGCGAAGATTTGGATCTGTCCGTTTTGCTTTCAGCGGAATCATTTCCCTCCTCATTACGCTTCTATTTCCGATGATAACCTTCCGGCGGAGCTTTTCCCGCAGTATACTACTATTGAATACGAGTCGACTGCGGAAACGCCGTCTTCGGTTCCTCCGGTGTTCATGTTTGTGTTGGATACTTGTATAATTGAAGAGGAGATTGTGTTTTTGAAATCTGCTTTGTCTCAGGCTGTTGATCTGCTTCCTGATATTTCTTTGGTTGGACTCATTACGTATGGCACTTATGTTCACGTTCATGAATTGGGGTTCGGTCAGATTCCGAAGACGTATGTGTTTAAGGGCTCGAAGGATGTGTCCAAGGAGCAGCTGCTGGAGCAGATGAACTTCTTTCTCAAAAAGCCCAAGCCTCCCACTGGTGTCATTGCTGGTGCTAGAGATGGACTTTCGACTGAGAGTATTGCTCGCTTTTTGCTGCCTAAGTCTGAGTGCGAGTTTGCTCTCAATTCAGTTTTGGAGGAGCTGCAGAAAGACCCTTGGGCAGTTCCAGCGGATCAACGAGCCCCAAGGTGCACTGGCACTGCCCTGAGCATTGCCGCCAGCTTGCTAGGCGCTTGTGTTCCTGGTTCAGGAGCAAGAATCTTAGCATTTGTTGGTGGGCCTTCGACCGACGGACCGGGTGCTATTGTGTCTAAAAATTTATCTGAACCAATTCGGTCTCACAAGGACCTGGATAAAGATTCTGCCCCTCATTTTCATAAAGCTGTGAAGTTCTATGAGGGACTCTCAAAGCAGCTAGTTCATCAAGGACATGTACTTGATCTTTTCGCTTGTGCTCTTGACCAGGTCGGTATTGCTGAAATTAAAGTTGCAGTTGAAAAGACTGGAGGGCTTGTTGTGCTTGCAGAAAGTTTTGGCCACTCAGTTTTTAAGGATTCACTTAAACGTGTGTTTTCTGGAGAATATGATCTTGGCTTATCATCAAAGATCATTGTAAATATGGGCCACACCATTTTGGGTGGGTTTCAAGTCGTAGATAAGAGGATGCATTCGGTAGTCTTTGTTTTGCCTTCCTATAACAAGTCATTGTCGCTTTCCTTGGGTTTTTGTCATCCCTTCACAGACCAAGATATGTCGGAGGTTGTTGTCGTTCTTTCTGTCATTTCCGATCAAATTTTTTTCCCCATATCCTTTGCTCCCATTCTCCCTCCTATGGTGCCTCTGCGTTCTGCTCTTTTTGGAAGTGGTATATTTGAGATCAATTGTTCAAAGGATATAAAAGTTCAGGGAGTTATTGGTCCCTGTGCATCCCTTGAAAAGAAAGGTCCTTTGTGTTCAGACACTGTCATTGGTCAAGGAAATACAAGTGCATGGAAAATGTGTGGTCTTGATAAAGCAACAACTTTGAGTCTCATATTTGAAATTGTCAAAAAGGAGAGCACAGATGCTGCTGTTCAATCTGCCAGCAATCAATTTGATTCCAGTTATCAGAACAACAGTGGTCAAATGAGACTTCGTGTTACAACTCTTTCTAGAAGATGGGTTGCTGGACCTGGAAGCATACAGGACTTGATTGCGGGGTTTGACCAAGAAGCTGCTGCTGCAATCATGGCACGTCTAGTTTCCTTCAAGATGGAAAATGAGGCAGAGTTTGATCCAATAAGATGGTTGGATAAATCATTGATTCATCTTTGTTCCCGTTTTGGAGATTATCAGAAGGATACTCCATCTTCATTCAGCTTATCTCCACGTTTTTCAATATTTCCTCAGTTTATCTTTCATTTACGACGATCTCAGTTTGTGCAGGTTTTTAATAACAGTCCTGATGAGACTGCGTACTTCAGAATGATCCTGAACCGTGAGAATGTTGCTAATTCTGTTGTAATGATCCAACCGTCATTGATTTCTTACACATTTCATTCAGCCCCAGAACCGGTTCTTCTTGATGTAGCTGCCATTGCAGCTGACAGGATTCTCCTATTGGATGCATATTTCACTGTTGTTATCTTCCACGGGGCAACTATTGCTCAATGGAGAAAAACTGGGTATCATAATCAGCCTGAACATCAGGCGTTTGCTCAGTTGCTTCAAGCTCCGCGTGATGATGCAGAAGCAACGATTAAGGAAAGATTTCCAGTACCACGTTTGGTGATCTGTGATCAGCATGGCTCGCAGAAGCTTGATTTTGATGTAGTTGTCGAAAGAACCTCATCTTCCGATCCGTTGAACACTTTTTTGCTTTGGGCGCAGGCACGTTTCCTCCTGGCAAAGCTGAATCCATCAGCCACCTATAACACTGAATCTCCCCTTCCTGGTGGAGATATCATCTTCACCGACGACGTCAGTTTCGAAGTCTTCTTGGATCATCTACAGAGATTAACCGTTCAATAA 2607 44.53 MAEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPVSAMYTPIKAFPNMPVLPYSPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESTAETPSSVPPVFMFVLDTCIIEEEIVFLKSALSQAVDLLPDISLVGLITYGTYVHVHELGFGQIPKTYVFKGSKDVSKEQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFLLPKSECEFALNSVLEELQKDPWAVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGPSTDGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALDQVGIAEIKVAVEKTGGLVVLAESFGHSVFKDSLKRVFSGEYDLGLSSKIIVNMGHTILGGFQVVDKRMHSVVFVLPSYNKSLSLSLGFCHPFTDQDMSEVVVVLSVISDQIFFPISFAPILPPMVPLRSALFGSGIFEINCSKDIKVQGVIGPCASLEKKGPLCSDTVIGQGNTSAWKMCGLDKATTLSLIFEIVKKESTDAAVQSASNQFDSSYQNNSGQMRLRVTTLSRRWVAGPGSIQDLIAGFDQEAAAAIMARLVSFKMENEAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLDAYFTVVIFHGATIAQWRKTGYHNQPEHQAFAQLLQAPRDDAEATIKERFPVPRLVICDQHGSQKLDFDVVVERTSSSDPLNTFLLWAQARFLLAKLNPSATYNTESPLPGGDIIFTDDVSFEVFLDHLQRLTVQ 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6880966 6895340 - Maker00023694 Lcy13g0545 650850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0545 868 Pfam Gelsolin repeat 714 797 IPR007123 -
Lcy13g0545 868 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 821 868 IPR036180 -
Lcy13g0545 868 FunFam Protein transport protein SEC23 703 801 - -
Lcy13g0545 868 Gene3D von Willebrand factor, type A domain 123 395 IPR036465 -
Lcy13g0545 868 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Lcy13g0545 868 Gene3D - 443 587 - -
Lcy13g0545 868 Gene3D Severin 708 852 IPR029006 -
Lcy13g0545 868 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 704 798 IPR036180 -
Lcy13g0545 868 Pfam Sec23/Sec24 helical domain 601 699 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Lcy13g0545 868 SUPERFAMILY vWA-like 123 391 IPR036465 -
Lcy13g0545 868 SUPERFAMILY beta-sandwich domain of Sec23/24 4 600 - -
Lcy13g0545 868 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 403 IPR037364 GO:0005096(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Lcy13g0545 868 Pfam Sec23/Sec24 beta-sandwich domain 488 587 IPR012990 -
Lcy13g0545 868 Gene3D - 51 109 - -
Lcy13g0545 868 FunFam Protein transport protein SEC23 51 110 - -
Lcy13g0545 868 FunFam Protein transport protein SEC23 598 723 - -
Lcy13g0545 868 Gene3D Sec23/Sec24 helical domain 591 707 - -
Lcy13g0545 868 SUPERFAMILY Zn-finger domain of Sec23/24 45 116 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Lcy13g0545 868 FunFam Protein transport protein SEC23 124 398 - -
Lcy13g0545 868 SUPERFAMILY Helical domain of Sec23/24 601 703 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Lcy13g0545 868 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0545 K14006 - - csv:101211017 791.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1275 Lcy-Chr11:36041684 Lcy13g0545 Lcy-Chr13:6880966 0 dispersed
Lcy13g0328 Lcy-Chr13:3588672 Lcy13g0545 Lcy-Chr13:6880966 2.58E-200 dispersed
Lcy13g0545 Lcy-Chr13:6880966 Lcy2g2371 Lcy-Chr2:49880311 1.12E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
Vvi15g136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed09g0135 . . . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011146 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31