Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0561 ATGGCCGGCGGAGGTGAAGGAACCACGCTGGAATTCACTCCGACGTGGATTGTCGCCGCCGTCTGCACCGTCATCGTCGCCATTTCCCTCGCCTTAGAGCGCCTCCTCCACTTCCTCGGCAAATACCTCAAGAGCAAGAATCAGAAGCCGCTAAATGAAGCTCTACAGAAAGTTAAAGAAGAATTGATGCTTATGGGGTTTATTTCACTTCTGCTCACTGTATTTCAAGGCGCTATCTCTAAATTGTGTGTTTCTGAGAGTTTGACTGAGCATTTACTTCCGTGTGATCTGAAGGATAAACCTAAAGCCGAAAACGATTCGCCTTCCGGTGAAGCTGGTTCATCGACGACGAAGCATTTTCAGACGTTCTTTGTTTCGAGTATTTCTGGTACGGCTAGGCGCCTTCTTGCTGAGGGATCGGCTTCACAGAATGGTTATTGTGCTCAAAAGATTCGTCAGTGGAAGCATTGGGAGGATTCTATTGCGAAAGAGAATTATGATACCGAACACGTTCTAAAACCAAAAGTCACCGACGTCCATCAACATGCTTTTATCAAAGATCACTTTTTGGGCATTGGGAAAGATTCAGTGCTTCTTGGTTGGTTGCATTCCTTCCTCAAGCAATTTTATGCTTCTGTAACAAAATCAGATTATGCAACATTACGGCTTGGTTTCATTATGTTGGTATCTTTGGATCTTCGTTGGCATACATATTTCTGGATAGCATTCATTCCTTTCGTTCTTCTACTTGCTGTGGGAACGAAGCTGGAACATATTATAACCCAGCTGGCTCATGAGGTTGCAGAGAAGCATGTAGCAATCGAAGGTGATCTAGTAGTCCAACCATCCGACGATCACTTTTGGTTTCAGCGACCCCGTATTGTTCTCTTCTTGATCCACTTTATACTTTTCCAAAACGCTTTTGAGATTGGATTTTTCTTCTGGATATGGGTTCAATATGGCTTTGACTCCTGCATCATGGGACAAGTCCGCTATATCATTCCAAGGCTTATTATTGGGGTGTTTGTTCAGGTTCTTTGCAGTTACAGCACCCTACCGCTCTACGCCATAGTCACACAGATGGGAAGCTCTTTCAAGAAAGCAATCTTTGATGAACATGTACAAGTAGGCCTAGTTGGCTGGGCTCAGAAGGTGAAGAAAAGAAAGGGACTGAGAGCCGCCGCTGATGGCTCCAGCCAAGGAAGCAAGGAAGGTGGTTCTACTGTGGGGATTCAGCTGGGAAATGTTATGCGCAAGGCTTCTGCACCAAGTGAAATTAAGCCTGATGATTCCAAATCAAATGATTTGCCTTAG 1314 44.9 MAGGGEGTTLEFTPTWIVAAVCTVIVAISLALERLLHFLGKYLKSKNQKPLNEALQKVKEELMLMGFISLLLTVFQGAISKLCVSESLTEHLLPCDLKDKPKAENDSPSGEAGSSTTKHFQTFFVSSISGTARRLLAEGSASQNGYCAQKIRQWKHWEDSIAKENYDTEHVLKPKVTDVHQHAFIKDHFLGIGKDSVLLGWLHSFLKQFYASVTKSDYATLRLGFIMLVSLDLRWHTYFWIAFIPFVLLLAVGTKLEHIITQLAHEVAEKHVAIEGDLVVQPSDDHFWFQRPRIVLFLIHFILFQNAFEIGFFFWIWVQYGFDSCIMGQVRYIIPRLIIGVFVQVLCSYSTLPLYAIVTQMGSSFKKAIFDEHVQVGLVGWAQKVKKRKGLRAAADGSSQGSKEGGSTVGIQLGNVMRKASAPSEIKPDDSKSNDLP 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7109589 7116146 - Maker00023447 Lcy13g0561 650866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0561 437 Pfam Mlo family 148 228 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy13g0561 437 Pfam Mlo family 8 149 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy13g0561 437 Pfam Mlo family 234 406 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy13g0561 437 MobiDBLite consensus disorder prediction 418 437 - -
Lcy13g0561 437 PANTHER MLO-LIKE PROTEIN 1 231 406 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy13g0561 437 MobiDBLite consensus disorder prediction 423 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0561 Lcy-Chr13:7109589 Lcy13g2270 Lcy-Chr13:41607802 1.95E-76 dispersed
Lcy13g0561 Lcy-Chr13:7109589 Lcy11g0297 Lcy-Chr11:4760616 4.99E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0561 K08472 - csv:101211868 780.785