Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0576 ATGGATGGACCAACTGGTCGTAGTGGCGGTGGCGTGGATATGAATTTACCGAACTATAAGCTTGGAAAAACACTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCGGAGCATGCTTTAACGGGCCATAAAGTTGCTATTAAGATCCTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAGAAAGTGAGGAGAGAGATCAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACTCCTGGAGATATTTATGTTGTGATGGAGTATGTAAAATCTGGAGAGCTATTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTCCAACAGATAATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTTCACAGAGATCTTAAGCCTGAGAATTTGCTTTTAGACTCCAAATGTAACGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCGGAGGTCATCTCTGGGAAATTATATGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTTATTCTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTCCCAAGTCATTTATCATCTGGTGCTAGAGAACTTATTCCTAGTATGCTGGTTGTTGACCCAATGAAGCGCATCACAATACCTGAGATTCGACAACACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCTGTGCCTCCACCTGATACAATGCAACAAGCAAAAAAGGCGAGACCCTTTAGAGACTACAGGGGGATGATCCAGGAGTTCCTCCTCCATCCGCCTTTTCGCGAGAAGGGGAGGTTTTTATGGTTAGCTGGGGTGTGTGCTGTGTTATGGGGTCTTTGGGGAGAGAGGAATAATAGGGTGTTTCGAGGTCTTGAGAGGAGTCCTTCTGATGTCTGGGATCTCACTAGATTCTATGTCTCTCTCTGGGCCTCTGTGTCTAAGATCGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTCCGTAACCGAATTCAAAATGAGGCCACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCGTATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGGCTTCCTGGATTTATGGATTATCAAGGAATGGGCTTAAGATCACAGTTTTCAGTTGAGAGAAAGTGGGCTCTAGGTTTACAGTCTCGAGCTCATCCACGTGAAATTATGACTGAAGTCCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAGTTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAATAATCACTACTTTGGGGACGAGTCTACCATCATTGAAAACGACGGTGTCGTAAAATCGCCGAATGTTATTAAGTTTGAAGTTCAGCTCTACAAAACACGTGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCACAGCTCCGAGTCCTCTAA 1770 44.12 MDGPTGRSGGGVDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPGDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKARPFRDYRGMIQEFLLHPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGDPTSPAVGHRLPGFMDYQGMGLRSQFSVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGVPGHHEGMINNPVHNNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7476289 7485167 + Maker00023901 Lcy13g0576 650881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0576 589 SUPERFAMILY Protein kinase-like (PK-like) 16 316 IPR011009 -
Lcy13g0576 589 Pfam UBA/TS-N domain 367 403 IPR015940 -
Lcy13g0576 589 SUPERFAMILY KA1-like 402 588 IPR028375 -
Lcy13g0576 589 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 18 294 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy13g0576 589 SMART uba_6 368 405 IPR015940 -
Lcy13g0576 589 Gene3D Transferase(Phosphotransferase) domain 1 12 304 - -
Lcy13g0576 589 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0576 589 FunFam Non-specific serine/threonine protein kinase 10 296 - -
Lcy13g0576 589 Gene3D - 365 408 - -
Lcy13g0576 589 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0576 589 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
Lcy13g0576 589 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0576 589 CDD UBA_SnRK1_plant 367 407 - -
Lcy13g0576 589 CDD STKc_AMPK_alpha 16 271 - -
Lcy13g0576 589 FunFam Non-specific serine/threonine protein kinase 469 587 - -
Lcy13g0576 589 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 540 588 IPR001772 -
Lcy13g0576 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0576 589 Pfam Kinase associated domain 1 546 588 IPR001772 -
Lcy13g0576 589 CDD AMPKA_C 463 586 - -
Lcy13g0576 589 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 366 406 IPR015940 -
Lcy13g0576 589 Gene3D Kinase associated domain 1, KA1 469 587 - -
Lcy13g0576 589 FunFam Non-specific serine/threonine protein kinase 10 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0576 Lcy-Chr13:7476289 Lcy5g1703 Lcy-Chr5:39519352 1.26E-81 dispersed
Lcy13g0576 Lcy-Chr13:7476289 Lcy10g0577 Lcy-Chr10:15544757 1.02E-202 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65558 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0576 K07198 - vvi:100254223 574.318