Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0594 ATGTGTTGTGGCCACGTGGCATCCATTGAGAGGGTTAACAAGTTTGCTTGTGTCACCACTCGGTGTCTATATGTTTGCTTCACGCAAGCAGCTGCCCTTCAACTTGCCCTCCTCTTTAAGACTCAAACCAAAAACACAAACAAAATCCCAACACTCAAAATTCATCAAATTTTCATCAATCTTTCAAAAAAAAAAAAAAAAAAAAAAAAACAAGAAGATCAAGAAGAACCCCATTATAGCCCTTTTCATATGACCCACAGCCATAGCATAATTGACCAACATCATCATCAAGTCCCACATCGAGAGAGCGTGATGAATGGCGGCGGCGGCCACGGCGGAGGGCCTTGCGGCGCGTGTAAGTTCTTGAGGAGAAAGTGTGTGAAAGGTTGCATTTTTGCACCGTATTTCGACTCCGACCAAGGCGCCGCCCACTTCGCCGCCGTGCATAAGGTGTTTGGAGCTAGCAATGCCTCCAAGCTTCTCCTCCGCATACCGCCTCACAAGCGTCTCGACGCCTGCGTTACTCTTTGTTACGAGGCTCTCGCTAGGGTTCGAGACCCCGTCTATGGTTGCGTCGCCCATATCTTCTCTCTTCAGCACCAGGTAGTGAACTTGCAGGCAGAGCTAGCATACATCCAGGCCAAACTCTCCACATTGCAGAGGCTGTTACAGCCGCCGCTACGCAGCCCGTCCCCGACTGCTCGACACCCGACGCTCCCGGAACTGACACCGGGCTCCGACATGGGCTTGCTGTCCAACGTTCCAATGGTCCTTGACCCCCTCCAAACACAGCTAGCTGGTAATGAAACGACTAGTAGCTTTCTGAACCCAATTGATCAGCAAGAGATGAATGAAGATGGTGATCTTCAATCTCTTGCTCGAGAATTCGTTTCGAGGTATTTGCCCGGAGTAAGATTCCGGCCGTCGTGCTCTCAGATTTAA 942 50.11 MCCGHVASIERVNKFACVTTRCLYVCFTQAAALQLALLFKTQTKNTNKIPTLKIHQIFINLSKKKKKKKKQEDQEEPHYSPFHMTHSHSIIDQHHHQVPHRESVMNGGGGHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLLRIPPHKRLDACVTLCYEALARVRDPVYGCVAHIFSLQHQVVNLQAELAYIQAKLSTLQRLLQPPLRSPSPTARHPTLPELTPGSDMGLLSNVPMVLDPLQTQLAGNETTSSFLNPIDQQEMNEDGDLQSLAREFVSRYLPGVRFRPSCSQI 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7728177 7731257 - Maker00023732 Lcy13g0594 650899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0594 313 ProSiteProfiles LOB domain profile. 114 216 IPR004883 -
Lcy13g0594 313 PANTHER LOB DOMAIN CONTAINING PROTEIN 112 233 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Lcy13g0594 313 Pfam Lateral organ boundaries (LOB) domain 115 213 IPR004883 -
Lcy13g0594 313 MobiDBLite consensus disorder prediction 225 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0594 Lcy-Chr13:7728177 Lcy3g1283 Lcy-Chr3:38744123 2.73E-42 dispersed
Lcy13g0594 Lcy-Chr13:7728177 Lcy13g0596 Lcy-Chr13:7782883 1.31E-51 proximal
Lcy11g1899 Lcy-Chr11:42713862 Lcy13g0594 Lcy-Chr13:7728177 1.58E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19367 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0594 - - - 0.0