Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0596 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGGCCGGCAGCTGCCAGTGCCGGCGGTGGCGGCGGAGGAGGCCCATGTGGGGCCTGCAAGTTCTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTCGCCCCTTATTTCGACTCCGAGCAAGGCGCTGCCCACTTCGCTGCAGTTCACAAGGTCTTCGGAGCCAGCAACGTCTCCAAACTCCTCCTTCATATTCCCGTCCACAAGCGTCTCGACGCTGTCGTCACCATTTGCTACGAGGCTCAGGCTCGCCTCCGAGACCCCGTCTATGGTTGCGTCGCTCACATCTTTGCTCTTCAACAACAGGTGGTGAGTTTGCAAGCCGAGCTGTCGTATCTTCAAGCCCATCTAGCTACATTGGAGCTGCCGTCGCCGCCGAACCCTCCGCCTCCGCCGCCATGTTTTCCGGCGCAACCGCCTCTCTCCATCTCAGACCTGCCGTCGGCCTCCTCCTTGCCGGCCACTTACGATTTGTCGTCCCTCTTCGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCACCGCCAGTTTGCCGGCGGCGGCGGCGGAGGAGGAGGCGGATCGTCCGCGGCGGCCGGAGAGGGCGACCTTCAAGCCTTGGCCCGTGAACTCCTCCATAGACACGGCGCTCCGCCGTGCTCCGACACCTCGTCGCCGCCGTCGCTCTCTAAATGA 717 62.76 MSANPSTSGGGPAAASAGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPNPPPPPPCFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDHRQFAGGGGGGGGGSSAAAGEGDLQALARELLHRHGAPPCSDTSSPPSLSK 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7782883 7786464 + Maker00023517 Lcy13g0596 650901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0596 238 ProSiteProfiles LOB domain profile. 24 126 IPR004883 -
Lcy13g0596 238 MobiDBLite consensus disorder prediction 1 21 - -
Lcy13g0596 238 Pfam Lateral organ boundaries (LOB) domain 25 123 IPR004883 -
Lcy13g0596 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 22 140 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Lcy13g0596 238 MobiDBLite consensus disorder prediction 188 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0522 Lcy-Chr11:12170869 Lcy13g0596 Lcy-Chr13:7782883 1.91E-49 dispersed
Lcy11g1899 Lcy-Chr11:42713862 Lcy13g0596 Lcy-Chr13:7782883 4.54E-68 dispersed
Lcy12g2128 Lcy-Chr12:42582856 Lcy13g0596 Lcy-Chr13:7782883 2.55E-51 dispersed
Lcy13g0596 Lcy-Chr13:7782883 Lcy3g1283 Lcy-Chr3:38744123 1.70E-48 dispersed
Lcy13g0594 Lcy-Chr13:7728177 Lcy13g0596 Lcy-Chr13:7782883 1.31E-51 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19368 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0596 K21994 - csv:101220603 366.696