Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0601 | ATGGATGGAATTACACCCCACAATCGCCCTCTTCCCCCTCCTTTTCTCTCCAAAGATCTCCATCTCCACCATGGATTGTTCCACCACCAAAGCTCCGACGACGACCAAAGCGGCGGCGCCACCGGCGGATCTAAGAGGGACCGGGAGGAGGAAAACCCCACCACGGCGGCCGACAGCAAAGAATTGTCCAATTCTTCTTCTCGGCGGCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCCAAGCCACCCATTATCATCACTAGAGACAGCGCCAACGCCCTCAGATCCCATCTCATCGAAATCTCCACCGCCTCGGACATCGTCGACTCCCTCGCCGCCTTCGCGCGCCGCCGCCAGCGCGGCGTTTGTATTTTAAGCGCCACCGGAACTGTCGCCAACGTCACTCTCCGTCAGCCGGCCTCCGCCGGCGCTGTCATCACCTTGCCTGGCAGATTTGAAATTCTCTCCCTCTCCGGCTCCTTCCTCCCGCCGCCGGCTCCCCCGGCCGCCTCCGGCCTCACCGTCTACTTGGCCGGCGGGCAGGGGCAGGTCGTGGGCGGGAATGTCGTCGGCCCACTTTCGGCATCCGGTCCGGTGATTATTATGGCGGCTTCTTTTGGTAATGCGGCGTATGAACGGCTCCCCATTGATGAAGACGACGAAACTTCCCCGGCGGCGGAGATGGCTGGACAGCAGGCGGCGGCACCACCGCCGCAGCAATTGTTGGGGGATCCTAATGGGGGATTGTTTCATGGGAATGTTGTGAATTCTTCATGCCAATTGCCAGCGGAGGCGGCGGCGTATTGGGGAGGAGGACGGCCACCGTATTGA | 834 | 61.15 | MDGITPHNRPLPPPFLSKDLHLHHGLFHHQSSDDDQSGGATGGSKRDREEENPTTAADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASAGAVITLPGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVVGPLSASGPVIIMAASFGNAAYERLPIDEDDETSPAAEMAGQQAAAPPPQQLLGDPNGGLFHGNVVNSSCQLPAEAAAYWGGGRPPY | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7835251 | 7836084 | + | Maker00023479 | Lcy13g0601 | 650906 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0601 | 277 | MobiDBLite | consensus disorder prediction | 222 | 248 | - | - | |
Lcy13g0601 | 277 | CDD | DUF296 | 96 | 179 | IPR005175 | - | |
Lcy13g0601 | 277 | Gene3D | - | 95 | 225 | - | - | |
Lcy13g0601 | 277 | ProSiteProfiles | PPC domain profile profile. | 92 | 232 | IPR005175 | - | |
Lcy13g0601 | 277 | MobiDBLite | consensus disorder prediction | 57 | 72 | - | - | |
Lcy13g0601 | 277 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Lcy13g0601 | 277 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 37 | 241 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
Lcy13g0601 | 277 | MobiDBLite | consensus disorder prediction | 40 | 56 | - | - | |
Lcy13g0601 | 277 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 96 | 207 | IPR005175 | - | |
Lcy13g0601 | 277 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 92 | 220 | - | - | |
Lcy13g0601 | 277 | FunFam | AT-hook motif nuclear-localized protein | 95 | 222 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1903 | Lcy-Chr11:42746896 | Lcy13g0601 | Lcy-Chr13:7835251 | 1.65E-91 | dispersed | |
Lcy12g1745 | Lcy-Chr12:38211174 | Lcy13g0601 | Lcy-Chr13:7835251 | 4.45E-89 | dispersed | |
Lcy13g0601 | Lcy-Chr13:7835251 | Lcy4g2010 | Lcy-Chr4:46595440 | 5.67E-74 | dispersed | |
Lcy13g0601 | Lcy-Chr13:7835251 | Lcy6g0240 | Lcy-Chr6:2114577 | 5.98E-22 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0601 | - | - | - | 0.0 |