Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0601 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCCCCTCCTTTTCTCTCCAAAGATCTCCATCTCCACCATGGATTGTTCCACCACCAAAGCTCCGACGACGACCAAAGCGGCGGCGCCACCGGCGGATCTAAGAGGGACCGGGAGGAGGAAAACCCCACCACGGCGGCCGACAGCAAAGAATTGTCCAATTCTTCTTCTCGGCGGCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCCAAGCCACCCATTATCATCACTAGAGACAGCGCCAACGCCCTCAGATCCCATCTCATCGAAATCTCCACCGCCTCGGACATCGTCGACTCCCTCGCCGCCTTCGCGCGCCGCCGCCAGCGCGGCGTTTGTATTTTAAGCGCCACCGGAACTGTCGCCAACGTCACTCTCCGTCAGCCGGCCTCCGCCGGCGCTGTCATCACCTTGCCTGGCAGATTTGAAATTCTCTCCCTCTCCGGCTCCTTCCTCCCGCCGCCGGCTCCCCCGGCCGCCTCCGGCCTCACCGTCTACTTGGCCGGCGGGCAGGGGCAGGTCGTGGGCGGGAATGTCGTCGGCCCACTTTCGGCATCCGGTCCGGTGATTATTATGGCGGCTTCTTTTGGTAATGCGGCGTATGAACGGCTCCCCATTGATGAAGACGACGAAACTTCCCCGGCGGCGGAGATGGCTGGACAGCAGGCGGCGGCACCACCGCCGCAGCAATTGTTGGGGGATCCTAATGGGGGATTGTTTCATGGGAATGTTGTGAATTCTTCATGCCAATTGCCAGCGGAGGCGGCGGCGTATTGGGGAGGAGGACGGCCACCGTATTGA 834 61.15 MDGITPHNRPLPPPFLSKDLHLHHGLFHHQSSDDDQSGGATGGSKRDREEENPTTAADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASAGAVITLPGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVVGPLSASGPVIIMAASFGNAAYERLPIDEDDETSPAAEMAGQQAAAPPPQQLLGDPNGGLFHGNVVNSSCQLPAEAAAYWGGGRPPY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7835251 7836084 + Maker00023479 Lcy13g0601 650906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0601 277 MobiDBLite consensus disorder prediction 222 248 - -
Lcy13g0601 277 CDD DUF296 96 179 IPR005175 -
Lcy13g0601 277 Gene3D - 95 225 - -
Lcy13g0601 277 ProSiteProfiles PPC domain profile profile. 92 232 IPR005175 -
Lcy13g0601 277 MobiDBLite consensus disorder prediction 57 72 - -
Lcy13g0601 277 MobiDBLite consensus disorder prediction 1 86 - -
Lcy13g0601 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 241 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lcy13g0601 277 MobiDBLite consensus disorder prediction 40 56 - -
Lcy13g0601 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 207 IPR005175 -
Lcy13g0601 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 220 - -
Lcy13g0601 277 FunFam AT-hook motif nuclear-localized protein 95 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1903 Lcy-Chr11:42746896 Lcy13g0601 Lcy-Chr13:7835251 1.65E-91 dispersed
Lcy12g1745 Lcy-Chr12:38211174 Lcy13g0601 Lcy-Chr13:7835251 4.45E-89 dispersed
Lcy13g0601 Lcy-Chr13:7835251 Lcy4g2010 Lcy-Chr4:46595440 5.67E-74 dispersed
Lcy13g0601 Lcy-Chr13:7835251 Lcy6g0240 Lcy-Chr6:2114577 5.98E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0601 - - - 0.0