Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0612 ATGGTGAGAGGAAAGACTCAGATGAGGTTAATAGAAAACGCCACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAGAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCTAACTCAAGCATGCAGGCAACCATAGAGCGTTATCGAAAGCATGCAAAAACCAAAGAAGCCCTCGATCCTCCTTCTGTTAATAATATGCAGTTGGAGCATCTGAATCATGAAGAAGCAGCAAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATTGATGAACTTCAACAGCTTGAACAACAGTTGGAGAAAAGTGTTGGCAAAATTAGAGCCAGAAAGATAGAAGTGTTTGAAGAACAGATTAAAGAACTAAGGCAAAAGGAGAAAGTCTTGGAAGCTGAAAATGCTAAGCTACTTGAAAAGTGGGAGAGTGAGGCAGAAGGAGTAGTAGTTGTAAAAGAAGTAGAAAGAGGAGAGAATTTGATGAACTATGCAGAAAGCAGCAGCCCAAGTTCAGAGGTGGAGACTGAATTGTTTATTGGGCCACCTGAAACAAGGCCCAGAAGATTTCTTTCTCTTAATTGA 681 41.26 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSSMQATIERYRKHAKTKEALDPPSVNNMQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSIDELQQLEQQLEKSVGKIRARKIEVFEEQIKELRQKEKVLEAENAKLLEKWESEAEGVVVVKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRRFLSLN 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8032163 8042637 + Maker00024111 Lcy13g0612 650917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0612 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 MobiDBLite consensus disorder prediction 197 226 - -
Lcy13g0612 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g0612 226 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy13g0612 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 Coils Coil 124 173 - -
Lcy13g0612 226 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 Coils Coil 97 117 - -
Lcy13g0612 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0612 226 Pfam K-box region 93 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g0612 226 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g0612 226 FunFam MADS-box transcription factor 1 13 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1921 Lcy-Chr11:42931674 Lcy13g0612 Lcy-Chr13:8032163 2.42E-66 dispersed
Lcy12g1173 Lcy-Chr12:23036294 Lcy13g0612 Lcy-Chr13:8032163 1.13E-11 dispersed
Lcy12g1715 Lcy-Chr12:37696684 Lcy13g0612 Lcy-Chr13:8032163 8.33E-63 dispersed
Lcy13g0612 Lcy-Chr13:8032163 Lcy6g0207 Lcy-Chr6:1858196 1.92E-52 dispersed
Lcy13g0612 Lcy-Chr13:8032163 Lcy13g0613 Lcy-Chr13:8059563 1.36E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19369 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0612 - - - 0.0