Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0613 ATGGGAAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGCCAAGTCACATTCTCCAAGCGCCGAAATGGCCTCCTCAAAAAGGCCTACGAGCTCTCTGTTCTTTGCGATGCCGAGGTCGCTCTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTTGGCAGTGCAGGTACCACCAAAACATTGGAGCGTTACCAACGTTGTTGTTTCTCTCCTCAACACAATTACATCGAACAAGAAACCCAGAACTGGTTCCAGGAAATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGTCGGACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAAGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGACTCAGATTATGATTGAGCAGATGGAAGACCTGCGCAGAAAGGAACGTCAACTTGGGGACCTCAACAGAGAGCTTAAGCTCAAGCTTGAGGCAGAGGGACAAAATCTTAAATCCATCCAAAGTTTTTGGAGTTCTAGCTCTGCACCTGCTGAACATGGCAACAGCTTCCCAATGCAAGCTAGCCCTATCGAATGCCAACACGAACCCATCTTACAAATCGGGTATCAGAATTATTTCTCAGCAGAGGGGCCATCATCTGTCCAAAAGAGCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 732 45.63 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQHNYIEQETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQMEDLRRKERQLGDLNRELKLKLEAEGQNLKSIQSFWSSSSAPAEHGNSFPMQASPIECQHEPILQIGYQNYFSAEGPSSVQKSMTCETNFIQGWVI 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8059563 8065093 - Maker00023791 Lcy13g0613 650918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0613 243 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 Coils Coil 119 171 - -
Lcy13g0613 243 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy13g0613 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g0613 243 Pfam K-box region 83 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g0613 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g0613 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g0613 243 FunFam MADS-box transcription factor 1 13 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0427 Lcy-Chr12:5212290 Lcy13g0613 Lcy-Chr13:8059563 2.93E-36 dispersed
Lcy13g0613 Lcy-Chr13:8059563 Lcy3g0341 Lcy-Chr3:10647189 8.47E-70 dispersed
Lcy13g0612 Lcy-Chr13:8032163 Lcy13g0613 Lcy-Chr13:8059563 1.36E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19370 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0613 K09264 - csv:101219421 408.297