Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0616 ATGGATAATTACGGCTCTTCCCCTTCATATCCATACCATAATCCATATGCATATCCTCGTGCAGCTCCTCCTCAATACCCACCTCATTCTCAATATCCGCCTCCTTCTCAATACCCACCTCCTCCTTATGCACATCCAAATGCAGATCCATATGCTCGTCCTCCTTACCCTTACGCGTATAATCCTCCACATGCCTCTGCATTTCCATATCCCCCACCCCCATCTCATTCTGGCCTAGAGTATCATCATCCACCTCCACATTCTGGTCTTGTACCTTATTCATCATATCCTTACTCTGATACCTCGTCTACTAGTAGTGCTGCTAGGCCATCCATTCAGTATCCTAACAATTTCCAATCTGGTACATCCCCATATCGGTATCAAGAATCTAATACATACCCTCCACCAGAAAGTCAATATCCACCACCCCCTTCACGAGTAAATAGCTTCTCCAGCCACTACAGGAATGATAGTGCTGATTCCACCTCTTCCGTCTCTTCTGCATACCCACCTCTGGATGACCTTATGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCAGCTTCGCCTCCTGCACCTGCTGCAGCACCTGTACCTACACCTTCACCTGCACCTGCACAACCTTCAGCTTTGTTATTGGCATCACCTCAAAGTGCAAGATATGATCGGCGTGATCGGTTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTCGACACAGGGGGTTCAGATCAAATGACTACATCCAAACAACCTTCATTTTCCCATTCAAGCTCATTCAGTGGTTCTCAACATGGTCAGAACTTGCAGATTGTTCCATTGAACAGTAAAGCATCATTGAAAGTTTTGCTTTTACATGGAAACTTAGAAATATGGGTTAATGAGGCCAGAAATCTTCCAAATATGGATATGTTTCACAAAACATTGGGGGATATGTTCGCAAAATTACCTGGGCACATGAGCAACAAAATTGAAGGACGTGTGAGTCATAAGATCACTAGCGATCCTTACGTGTCGATCTCTGTAGCAAATGCAGTTATTGGGAGGACTTTTGTGATAAGCAATAATGAAAATCCTATATGGAGGCAACATTTCTATGTCCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTGGTTAAAGACAGTGATGTCGTTGGTTCACAGCTAATTGGAACTGTAACAATTTCTGCAGAACAAATATATTCAGGGTCTATAGTTGAGGGAACATTCCCAATCCTACTTGGTGGGAAGCCATGCAAGCATGGAGCTGCTCTAAATCTTTCTATTCAATATACCCCAATGGAGAGGCTTAGTACTTATCATCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGCGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGACGGACATCTTCCAAATTTGATGCTTGATAATGGTACGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCCGTACGTCAGGCTCGCAGGTTAATTTACATAACTGGGTGGTCAGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGCGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCCAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGAAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAGACTCGCCGTTTTTTCAAACACTCCTCTGTGCAAGTGATACTTTGTCCTCGCATTGCTGGAAAACGACATAGCTGGGTTAAGCAAAAAGAAGTTGGAACTATTTATACACACCATCAGAAAACAGTTATCGTGGATGCTGAAGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATACTCCATCACATCCCATATTTCGGACACTTCAAACAACACACAAGGATGATTACCACAATCCTACATACACGGAGGAAAGTTGGAGAGTCACACCCCAAAAGCCAGGCGATCAGAAGCCCATATCTTTCCAATGTGGGACAAAGGCATCCCATACTGCCTTGGTCCCTAACAATTGCCCCTCCCTGGAAAGCCGACGTCTCGGCGGCTGTGCACGGCGACGCTTCACTCGGCTGGTTCCGGTCAACCCCTCCGCCACCACTCCTCTCCGAAGCCGTCGACCACCGGCTCTGATACCAATTGTTAGGCATCCCATACTGCCTTGGTCCCTAACAGAAGTCTCGTTCAATTGGGCACTAAAGAAATACGAAATTGGCAGACAATTGAATGAATTTGTACTGCATGGTATTAGAGTGCTGTATCCTCTTGAGAAGATCCAAAGTGATAGTGCTAAATTGTACAGCGTCAACTGTCAAGTTTTAATGGGTAGTGTTGTTGGTTGTCCAAGAGAACCATGGCATGATCTGCACAGCAAAATTGATGGTCCAGCAGCATATGATGTTTTGACTAATTTTGAGGAGCGATGGAGGAGGGCTTCAAAACCTCACGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGCATTGAAAGAATTCATGACATAGTCGGAATTTCTGAAGCTTACTGCACTAATGAAAATGACCCCGAATCATGGCATGTGCAGATTTTTCGCTCAATTGATTCAAGTTCTGTTAAAGATTTCCCAAAGGATCCAAAAGATGCCCCAAGCAAGAACCTTGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATATGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATACAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGCAAATGAGAGATTTGCTGCATATATTGTTATCCCCATGTGGCCCGAGGGCGTTCCAACTGCTGCTGCCACTCAGAGGATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCTTTGATGGAGGTTGGTCTTGAGGAAGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGCTATGGATGGAAATGATCCTTCATGTTCTGGAAGTCCTAATGCAGAAAACACCCCTCAGGCTCTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTAATTTTGGGATCTGCTAACATCAACCAGAGATCCATGGAAGGAACAAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACGTGGGCAAGGAAACTTGCACATCCTCGTGGACAGATCTATGGATACAGGATGTCGTTGTGGGCGGAGCACACGGGAACTATCGAAGACTGTTTCAACCAACCCGAGAGCCTGGAATGCGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGTAGAGTAAGATCTCTTCCTGGATATGAAAACTTTCCAGATGTAGGAGGAAAAATAGTTGGTTCTTTTCTTGGCATTCAGGAGAACCTCACTATCTAA 3714 43.86 MDNYGSSPSYPYHNPYAYPRAAPPQYPPHSQYPPPSQYPPPPYAHPNADPYARPPYPYAYNPPHASAFPYPPPPSHSGLEYHHPPPHSGLVPYSSYPYSDTSSTSSAARPSIQYPNNFQSGTSPYRYQESNTYPPPESQYPPPPSRVNSFSSHYRNDSADSTSSVSSAYPPLDDLMCNVHLSDHQPTAPASPPAPAAAPVPTPSPAPAQPSALLLASPQSARYDRRDRFYGFPNSSFSSFDTGGSDQMTTSKQPSFSHSSSFSGSQHGQNLQIVPLNSKASLKVLLLHGNLEIWVNEARNLPNMDMFHKTLGDMFAKLPGHMSNKIEGRVSHKITSDPYVSISVANAVIGRTFVISNNENPIWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVTISAEQIYSGSIVEGTFPILLGGKPCKHGAALNLSIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGTYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYATECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDAEAGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTTHKDDYHNPTYTEESWRVTPQKPGDQKPISFQCGTKASHTALVPNNCPSLESRRLGGCARRRFTRLVPVNPSATTPLRSRRPPALIPIVRHPILPWSLTEVSFNWALKKYEIGRQLNEFVLHGIRVLYPLEKIQSDSAKLYSVNCQVLMGSVVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIVGISEAYCTNENDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNTNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREAMDGNDPSCSGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLAHPRGQIYGYRMSLWAEHTGTIEDCFNQPESLECVKRVRTMGELNWKQFAADDVTEMRGHLLKYPVEVDRRGRVRSLPGYENFPDVGGKIVGSFLGIQENLTI 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8158749 8173398 + Maker00024031 Lcy13g0616 650921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0616 1237 MobiDBLite consensus disorder prediction 94 134 - -
Lcy13g0616 1237 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 287 437 IPR035892 -
Lcy13g0616 1237 Gene3D Endonuclease Chain A 897 1133 - -
Lcy13g0616 1237 Gene3D Endonuclease Chain A 490 685 - -
Lcy13g0616 1237 Gene3D Endonuclease Chain A 779 864 - -
Lcy13g0616 1237 Gene3D C2 domain 284 427 IPR035892 -
Lcy13g0616 1237 ProSiteProfiles C2 domain profile. 267 413 IPR000008 -
Lcy13g0616 1237 SMART pld_4 1083 1110 IPR001736 GO:0003824(InterPro)
Lcy13g0616 1237 SMART pld_4 613 648 IPR001736 GO:0003824(InterPro)
Lcy13g0616 1237 MobiDBLite consensus disorder prediction 240 268 - -
Lcy13g0616 1237 MobiDBLite consensus disorder prediction 1 211 - -
Lcy13g0616 1237 MobiDBLite consensus disorder prediction 17 80 - -
Lcy13g0616 1237 MobiDBLite consensus disorder prediction 188 208 - -
Lcy13g0616 1237 Pfam Phospholipase D C terminal 1157 1227 IPR024632 -
Lcy13g0616 1237 FunFam Phospholipase D delta 489 691 - -
Lcy13g0616 1237 SUPERFAMILY Phospholipase D/nuclease 454 850 - -
Lcy13g0616 1237 MobiDBLite consensus disorder prediction 144 169 - -
Lcy13g0616 1237 Pfam Phospholipase D Active site motif 615 648 IPR001736 GO:0003824(InterPro)
Lcy13g0616 1237 Pfam Phospholipase D Active site motif 1085 1110 IPR001736 GO:0003824(InterPro)
Lcy13g0616 1237 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 613 648 IPR001736 GO:0003824(InterPro)
Lcy13g0616 1237 SUPERFAMILY Phospholipase D/nuclease 876 1169 - -
Lcy13g0616 1237 CDD C2_plant_PLD 283 435 - -
Lcy13g0616 1237 PANTHER PHOSPHOLIPASE D 815 1225 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy13g0616 1237 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1083 1110 IPR001736 GO:0003824(InterPro)
Lcy13g0616 1237 SMART C2_3c 290 412 IPR000008 -
Lcy13g0616 1237 Pfam C2 domain 289 414 IPR000008 -
Lcy13g0616 1237 FunFam Phospholipase D 897 1129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0616 Lcy-Chr13:8158749 Lcy6g1997 Lcy-Chr6:42548569 0 dispersed
Lcy13g0616 Lcy-Chr13:8158749 Lcy13g1878 Lcy-Chr13:37694548 7.85E-298 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0616 K01115 - csv:101218942 1018.07