Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0617 ATGCTCATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGGCCACCGATCTCCGTATCAACGACAACGACCCCTCCGACTCCTCTCGAATGGACCTTCTTGCCCTTGCTCCCAAGCAGGAGCATCCCGATTCCGACGACTCCAAGCTCCCACCGCCGGAAATTCAGCTAGTCAAGTTCTCGGCGGAGATTGCTAAAACGGTGTCGTCTCTCCCGCCCAAGAGAGCCTCCACCAAGGATCGTCACACTAAAGTCGAGGGCCGCGGCCGCCGAATCCGGATTCCGGCCACCTGTGCGGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGGTGGCTTCTCGAACGGGCCGAGCCGGCGATCATCGCCGCTACTGGGACTGGTACCATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACTACTTCTTCTAACCACGATTCCGCCGACCAATCCGGCGCCAAGAAGCGCCGTAAACGCCCCGCTAATAGTGATTACGTTGACGTAAATGACGCCGTTTCCGTCTCCGCCTCAAACGGCGTCGTTCAGGTTGGTGCTGCTGCCGGTTCCGCCGCCGTTCAACAGGCTTTTCCACCGGGGTTTGTTCCGGTGTGGGCCATTCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTAGCTTGCTCTTCCACCCGTCCGCAGTTATTCTCATTTCCGGCACCGGCGGCGGCGCCACTCATCAACACGACGGCGAGGCCGATTTCCGCCGTGCCGTCGAAGCCGGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCGAGCACTTCGAGCTCTTCGGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGCCCCGACGACCAGCAAGACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGGTCATCCTCGAAACATTGA 1038 58.09 MLMADIQKQELDDDDDSPATDLRINDNDPSDSSRMDLLALAPKQEHPDSDDSKLPPPEIQLVKFSAEIAKTVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSNHDSADQSGAKKRRKRPANSDYVDVNDAVSVSASNGVVQVGAAAGSAAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAAPLINTTARPISAVPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTAPTTSKTTTQMLRDFSLEIYDKEELQFMSRSSSKH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8180023 8181060 - Maker00023491 Lcy13g0617 650922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0617 345 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Lcy13g0617 345 Pfam TCP family transcription factor 81 177 IPR017887 -
Lcy13g0617 345 MobiDBLite consensus disorder prediction 156 182 - -
Lcy13g0617 345 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy13g0617 345 MobiDBLite consensus disorder prediction 167 182 - -
Lcy13g0617 345 MobiDBLite consensus disorder prediction 267 318 - -
Lcy13g0617 345 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0617 Lcy-Chr13:8180023 Lcy2g0580 Lcy-Chr2:4966705 9.33E-32 dispersed
Lcy13g0617 Lcy-Chr13:8180023 Lcy6g0204 Lcy-Chr6:1832793 1.02E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19371 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0617 - - - 0.0