Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0617 ATGCTCATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGGCCACCGATCTCCGTATCAACGACAACGACCCCTCCGACTCCTCTCGAATGGACCTTCTTGCCCTTGCTCCCAAGCAGGAGCATCCCGATTCCGACGACTCCAAGCTCCCACCGCCGGAAATTCAGCTAGTCAAGTTCTCGGCGGAGATTGCTAAAACGGTGTCGTCTCTCCCGCCCAAGAGAGCCTCCACCAAGGATCGTCACACTAAAGTCGAGGGCCGCGGCCGCCGAATCCGGATTCCGGCCACCTGTGCGGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGGTGGCTTCTCGAACGGGCCGAGCCGGCGATCATCGCCGCTACTGGGACTGGTACCATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACTACTTCTTCTAACCACGATTCCGCCGACCAATCCGGCGCCAAGAAGCGCCGTAAACGCCCCGCTAATAGTGATTACGTTGACGTAAATGACGCCGTTTCCGTCTCCGCCTCAAACGGCGTCGTTCAGGTTGGTGCTGCTGCCGGTTCCGCCGCCGTTCAACAGGCTTTTCCACCGGGGTTTGTTCCGGTGTGGGCCATTCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTAGCTTGCTCTTCCACCCGTCCGCAGTTATTCTCATTTCCGGCACCGGCGGCGGCGCCACTCATCAACACGACGGCGAGGCCGATTTCCGCCGTGCCGTCGAAGCCGGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCGAGCACTTCGAGCTCTTCGGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGCCCCGACGACCAGCAAGACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGGTCATCCTCGAAACATTGA 1038 58.09 MLMADIQKQELDDDDDSPATDLRINDNDPSDSSRMDLLALAPKQEHPDSDDSKLPPPEIQLVKFSAEIAKTVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSNHDSADQSGAKKRRKRPANSDYVDVNDAVSVSASNGVVQVGAAAGSAAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAAPLINTTARPISAVPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTAPTTSKTTTQMLRDFSLEIYDKEELQFMSRSSSKH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8180023 8181060 - Maker00023491 Lcy13g0617 650922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0617 345 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Lcy13g0617 345 Pfam TCP family transcription factor 81 177 IPR017887 -
Lcy13g0617 345 MobiDBLite consensus disorder prediction 156 182 - -
Lcy13g0617 345 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy13g0617 345 MobiDBLite consensus disorder prediction 167 182 - -
Lcy13g0617 345 MobiDBLite consensus disorder prediction 267 318 - -
Lcy13g0617 345 MobiDBLite consensus disorder prediction 1 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0617 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0617 Lcy-Chr13:8180023 Lcy2g0580 Lcy-Chr2:4966705 9.33E-32 dispersed
Lcy13g0617 Lcy-Chr13:8180023 Lcy6g0204 Lcy-Chr6:1832793 1.02E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19371 None None None None Lcy TF