Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0637 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGCGGTGGAGGAGGCGGTGGTGCTCGAATCGTAGCCGATTTACCTTACGCGAACAGCAACAGCGCCACCGCCAACAATAACCCCACCGGCGGCATCGGCGGCGGAAATATGCCAACCGGCGCAATCGCTCCGCCGCGCTTAATCACTCAATCTCTCACCAAATCGATGTTTAACTCTCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAAGGGGATTTGGCTGCCCGGCTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAGGATGAACACGAGAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGACCAGGACGCCGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGGAGGACTCAAATGAAGACCCAATTGGAACGCCATGAGAATACCTTGCTTAGACAGGAGAATGATAAGCTCAGAGCTGAGAATATGTCAATTCGAGATGCTATGAGGAATCCTATCTGTTCGAACTGTGGCGGTCCAGCGATTATCGGGGAGATTTCGCTGGAAGAGCAGCAGTTGAGGATCGAAAATGCTCGGTTGAAGGATGAGTTGGACCGGGTTTGTGCGCTCGCTGGGAAGTTTCTCGGCAGACCGATTTCGTCGCTGGCTAACTCCATTGCACCTCCATTGCCAAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGACGTCAATGCCTATCGGGCCAGATTTTGGAGGTGGGTTGTCTGGTAATCTGGCTGTTGTTCCGCCACCTGCGAGGTCTACGCCGGGGATGGGACTGGATCGGTCGGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTTAAAATGGCTCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAGTACATGAGGACATTCACTCCTTGCATCGGCATGAAACCGAATGGTTTCGTCACCGAGGCCTCTAGAGAAACTGGAATGGTGATCATCAACAGCTTGGCTCTCGTCGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCGTGTATGATCGCTCGAACAACGACCACTGATGTGATCTCTGGTGGCATGGGTGGAACGAGGAACGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTACCGGTCCGGGAGGTAAATTTTCTCCGGTTCTGCAAGCAGCATGCCGAAGGGGTATGGGCAGTCGTCGACGTATCGGTCGACGCCATGAGAGAGACTCCAACAGGCGCTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGATATGCCCAATGGATATTCCAAGGTTACGTGGGTGGAACATGCAGAGTATGATGATAGCCAAGTTCACCAGCTCTACCGGCCTCTTCTCAGCTCCGGTATGGGTTTCGGCGCGCAACGCTGGGTCGCCACCCTTCAACGGCAATGCGAATGTCTTGCCATCCTCATGTCGTCTGCCGTACCAATCCGAGATCATACCGCCATAACCGCAGGTGGTCGTCGAAGCATGCTGAAGCTAGCACAACGAATGACAGCCAACTTCTGCGCTGGGGTGTGCGCCTCAACCGTACACAAATGGAACAAACTCAATGCCGGGAGCGTGGACGAGGACGTCCGTGTCATGACGCGGAAGAGCGTGGACGATCCCGGTGAACCACCGGGCATTGTGTTGAGTGCAGCAACGTCGGTGTGGCTCCCGGTATCGCCCCAACGACTGTTTGATTTCCTGCGGGACGAACGGCTGAGGAGCGAATGGGACATCCTATCGAACGGTGGCCCCATGCAGGAGATGGCCCATATCGCCAAAGGGCAGGATCATGGAAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCCAACCAGAGCAGTATGTTGATTCTACAAGAGACGTGCATAGACGCGGCCGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCGATGCACGTCGTGATGAACGGCGGTGATTCGGCTTATGTGGCGCTTCTGCCGTCCGGGTTTGCTATAGTACCTGACGGGGCGGTGACGCGGGGGCTGACAACGACGAATGGGAGTAGTCCAAGTGGCGGTGAGGGCCCACAGAGTCAGAGAGTGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAAATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAACAATCTCATCTCTTGCACTGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAAACGTGA 2523 54.78 MSFGGFLDGGGGGGGGGGGARIVADLPYANSNSATANNNPTGGIGGGNMPTGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREDEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVPPPARSTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISGGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDAMRETPTGASSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTRGLTTTNGSSPSGGEGPQSQRVTGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8674854 8680113 + Maker00023772 Lcy13g0637 650942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0637 840 Coils Coil 186 218 - -
Lcy13g0637 840 SUPERFAMILY Bet v1-like 596 833 - -
Lcy13g0637 840 Gene3D - 411 565 IPR023393 -
Lcy13g0637 840 Pfam Homeodomain 135 190 IPR001356 GO:0003677(InterPro)
Lcy13g0637 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 113 839 IPR042160 -
Lcy13g0637 840 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy13g0637 840 FunFam Homeobox-leucine zipper protein GLABRA 2 343 567 - -
Lcy13g0637 840 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677(InterPro)
Lcy13g0637 840 Coils Coil 233 253 - -
Lcy13g0637 840 MobiDBLite consensus disorder prediction 95 142 - -
Lcy13g0637 840 FunFam Homeobox-leucine zipper protein HDG1 122 208 - -
Lcy13g0637 840 Pfam START domain 343 568 IPR002913 GO:0008289(InterPro)
Lcy13g0637 840 SMART START_1 343 568 IPR002913 GO:0008289(InterPro)
Lcy13g0637 840 SMART HOX_1 133 196 IPR001356 GO:0003677(InterPro)
Lcy13g0637 840 CDD START_ArGLABRA2_like 338 567 - -
Lcy13g0637 840 SUPERFAMILY Bet v1-like 336 568 - -
Lcy13g0637 840 ProSiteProfiles START domain profile. 334 571 IPR002913 GO:0008289(InterPro)
Lcy13g0637 840 SUPERFAMILY Homeodomain-like 117 192 IPR009057 -
Lcy13g0637 840 Gene3D - 122 208 - -
Lcy13g0637 840 MobiDBLite consensus disorder prediction 770 790 - -
Lcy13g0637 840 CDD homeodomain 134 192 IPR001356 GO:0003677(InterPro)
Lcy13g0637 840 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0264 Lcy-Chr12:3214956 Lcy13g0637 Lcy-Chr13:8674854 2.19E-174 dispersed
Lcy12g0654 Lcy-Chr12:8024194 Lcy13g0637 Lcy-Chr13:8674854 1.65E-178 dispersed
Lcy12g1968 Lcy-Chr12:41033142 Lcy13g0637 Lcy-Chr13:8674854 1.93E-204 dispersed
Lcy13g0637 Lcy-Chr13:8674854 Lcy8g1446 Lcy-Chr8:41124241 2.65E-274 dispersed
Lcy11g1940 Lcy-Chr11:43090776 Lcy13g0637 Lcy-Chr13:8674854 1.68E-302 wgd
Lcy13g0637 Lcy-Chr13:8674854 Lcy6g0182 Lcy-Chr6:1654579 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19373 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0637 K09338 - csv:101222248 1536.93