Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0673 ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCTCAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGCAACAATGTTGGATCAGGGATGCCAATGGAGCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGAGCTCCATCCGGTGGAGTGGTTGCCAGTGAGCCGGTGAAAAGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCATCTGCTCCAAATCCAGCCACTGTAGCTTCTTCCCCGAAGCGGGGAAGAGGACGGCCTCCCGGGTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTGAAACACTTTCTGGGTCAGCTGGTATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGCTGCCAAAATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTAACTCTTCGTCAGCCTTCAACTTCGGGAGGCACAGTCACGTATGAGGGGCGTTTTGAGATAATATGTCTGTCAGGCTCATACGCTCTTGGAGAAACTGCTGGTTCTAGGAACCGCACCGGTGGTCTGAGTGTCTCTCTTGCCAGCCCTGATGGTCGTGTTATCGGCGGTGGAGTAGGAGGAGCACTTATCGCCGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGTCAAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATAGACTCGGATCATCAGGCGGTAGATCACGCAGTGGCAATTGCGAGCGTGCAGCAGAATCAGAATCTGACTCCGACCTCCTCAGTTAGTATGTGGCCGTCCTCGCAGTCTCTGGACATGCGCAATGCCCACATCGACATCGATCTGATGCGCGGTTGA 1005 52.34 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGMPMEPNPAISPYGGNVGAPSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPATVASSPKRGRGRPPGSGKKQQLASLGETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGETAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQAVDHAVAIASVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9570844 9575334 + Maker00023578 Lcy13g0673 650978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0673 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Lcy13g0673 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Lcy13g0673 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Lcy13g0673 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Lcy13g0673 334 CDD DUF296 150 264 IPR005175 -
Lcy13g0673 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Lcy13g0673 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Lcy13g0673 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Lcy13g0673 334 Gene3D - 151 284 - -
Lcy13g0673 334 MobiDBLite consensus disorder prediction 11 52 - -
Lcy13g0673 334 MobiDBLite consensus disorder prediction 98 114 - -
Lcy13g0673 334 MobiDBLite consensus disorder prediction 1 135 - -
Lcy13g0673 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Lcy13g0673 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0673 Lcy-Chr13:9570844 Lcy9g2354 Lcy-Chr9:47824431 1.45E-74 dispersed
Lcy12g1659 Lcy-Chr12:36978223 Lcy13g0673 Lcy-Chr13:9570844 7.60E-30 transposed
Lcy12g1658 Lcy-Chr12:36973309 Lcy13g0673 Lcy-Chr13:9570844 2.00E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0673 - - - 0.0