Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0695 ATGGTGATCTCTTCCATGCCTCTTCAATTTTATAGCCTCTTCAAGTTTAATGGTTCTATTGAAGATTTATCTTTGGCAGTCAAATGGTTGCTTGATTTTGGCAGCCTAATGGTTGATGTATTGAGTAAGCTGAGACATCCCAATATTTCCACGCTCATTGGAGTTTGTCCGGAGGCTTGTATTCTTGTTTATGACTATTTTGCCAATGGAAGTCTAGAAGATAGGCTAGCCTGCAAGGACAATTCTTCTCCGTTATCATGGAAAACTCGGATACGCATCGCCACTGAGTTATGCTCAGCTCTTATATTTATTCATTCGAATAAAATTTGCAAGATTATTCATGGGGACTTGAGGCCTGCGCATATACTATTAGATGCAAATTACGTTCCCAAACTTGCAGGATTTGGAACTTGTCATTTTTTGCCTCATAATGAAAAGTCGAGGCACAATGAAAATGTATTTGCCAAAGCTGACATGAAAGACAATCATGAATTTCCTCTCACAACGAAGGTGGATGTTTTTTGGTTTGGCATGTTATTGTTAAGTTTGTTAACTGGAAAAACTGACTTGAGGATGAAAGAAGATGTCCAATTCGCCATAGAGGAACGAAATTTGAAAGATGTATTGGATCCACGAGCGGGGGACTGGCCGTTCGTGCAGGCCGAACAGTTGGCCCAGTTGGCATTGAGGTGTTGCAATACAAATAGTATGTACAGGCCAGACCTTGAGTCTGATGTGTGGAGGGTACTTGAGCCAATGAGGGCTTCTTGTGGAGGTTCACTATCAATATGCCTAAGCTTTGGGGAGCAGCAAGTGCAAGCTCCTCCTTATTTCATATGTCCTATCTTCCAGGAAGTCATGGAGGATCCTCATGTAGCAGCGGACGGGTTCACCTACGAGGCAGAGGCATTGAGAGGATGGTTAGACAGTGGACACGACACTTCGCCAATGACGAACCTTAGGCTCGATCACCGAAACCTCGTCCCTAACCGTGCTCTTCGTTCTGCAATTCAAGAATGGTTGCAACAGCACCAGTAA 1038 43.45 MVISSMPLQFYSLFKFNGSIEDLSLAVKWLLDFGSLMVDVLSKLRHPNISTLIGVCPEACILVYDYFANGSLEDRLACKDNSSPLSWKTRIRIATELCSALIFIHSNKICKIIHGDLRPAHILLDANYVPKLAGFGTCHFLPHNEKSRHNENVFAKADMKDNHEFPLTTKVDVFWFGMLLLSLLTGKTDLRMKEDVQFAIEERNLKDVLDPRAGDWPFVQAEQLAQLALRCCNTNSMYRPDLESDVWRVLEPMRASCGGSLSICLSFGEQQVQAPPYFICPIFQEVMEDPHVAADGFTYEAEALRGWLDSGHDTSPMTNLRLDHRNLVPNRALRSAIQEWLQQHQ 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10035141 10037966 + Maker00023406 Lcy13g0695 651000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0695 345 PANTHER OS02G0152300 PROTEIN 33 338 IPR051348 -
Lcy13g0695 345 SUPERFAMILY Protein kinase-like (PK-like) 38 243 IPR011009 -
Lcy13g0695 345 Pfam Protein kinase domain 39 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0695 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
Lcy13g0695 345 ProSiteProfiles Protein kinase domain profile. 1 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0695 345 SUPERFAMILY RING/U-box 268 344 - -
Lcy13g0695 345 Gene3D Transferase(Phosphotransferase) domain 1 72 252 - -
Lcy13g0695 345 FunFam U-box domain-containing protein 54 273 345 - -
Lcy13g0695 345 Gene3D Phosphorylase Kinase; domain 1 32 71 - -
Lcy13g0695 345 CDD RING-Ubox_WDSUB1-like 275 330 - -
Lcy13g0695 345 SMART Ubox_2 277 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g0695 345 ProSiteProfiles U-box domain profile. 273 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g0695 345 Pfam U-box domain 274 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0695 Lcy-Chr13:10035141 Lcy6g0154 Lcy-Chr6:1441984 1.50E-102 dispersed
Lcy12g2017 Lcy-Chr12:41562284 Lcy13g0695 Lcy-Chr13:10035141 7.25E-07 transposed
Lcy13g0695 Lcy-Chr13:10035141 Lcy2g2014 Lcy-Chr2:38132784 1.99E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65561 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0695 - - - 0.0