Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g0700 | ATGGACGTGGGATTGGCGTTGGTTATTCTAACGGCCGTAACGGCGTATCTGCTGTGGTTCACCTTCATTTCACGGTCCTTAAAAGGCCCTCAAATGTGGCCCTTACTCGGCAGCCTCCCCGGACTCATCGAGAACTGCGACCGTTTACACGACTGGATCTCCGACAACCTCCGCGCCTGCGGCGGCACCTACCAGACCTGCATCTGGGCCTTCCCTTTCTTCGCCACCAAACAGGGCCTCGTCACCGTCACCTGCGACCCCAGAAATCTCGAGCACATTCTCAAGACCCGTTTCGACAATTACCCCAAGGGACCCACTTGGCAAGCCGTTTTTCACGACCTCCTCGGCCAGGGCATCTTTAACTCCGACGGTGACACCTGGCTCTTCCAGAGAAAAACTGCCGCCTTGGAATTTACCACTAGGACCCTCCGCCAAGCCATGGCTCGCTGGGTCAGCCGAGCCATTAAGCTTAGATTTTGCCCTATTCTCAAACAAGCCGAGCGAAATTCTAACCCCATTGATCTTCAGGATGTCTTGCTACGCCTTACTTTTGATAACATCTGCGGCTTGGCTTTCGGTAAGGACCCCATGACTTGCGCGCCCGGTTTCCCCGAGAACGGCTTTGCCACGGCTTTCGACCGAGCCACCGAGGCTTCCTTGCAACGCTTCATTTTGCCCGAAGTGCTTTGGAAATTCAAGAAGTGGCTCCGGCTTGGAATGGAGGTCAGCTTGAGCCGGAGCCTCGTCCATATTGAGGAGTACTTATCCAGTGTGATCGACTCACGTAAGCTCGAGTTGATGAATCAGCCTAAAGACTCCACCCCACACGACGATTTATTGTCGCGTTTCATGAAGAAGAAGGAAAGTAACTACTCCAACGCCTTCCTCCGCCACGTGGCGCTTAATTTCATCCTAGCTGGACGGGACACGTCGTCTGTCGCGCTGAGCTGGTTTTTCTGGTTGGTGACATTAAACCCACTCGTAGAGGAAAAAATCCTCCGCGAGATCTGCACCGTTCTGATTGAGACACGTGGCAATAACATCCCTTCATGGCTTGACGAGCCGTTAGGGTTCGAAGAGATCGACCGTCTGATTTATCTCAAAGCCGCTCTCACCGAAACCCTAAGACTGTACCCGTCGGTGCCGGAGGATTCAAAGCACGTCGTCGCCGACGACGTTCTGCCGGACGGTACCTTCGTTCCGGCGGGATCTTCGGTGACTTATTCGATCTACTCCACCGGAAGAATGAAGTCGACTTGGGGAGAGGACTGCCTCGAATTCCGGCCGGAGCGGTGGCTGACGGCGGATGGTAAGAAATTCATACCGTACGATTCGTACAAATTCGTAGCGTTCAATGCAGGGCCGAGGATCTGTTTGGGGAAGGATTTGGCGTATTTACAGATGAAGTCGATCGCAGCGGCGGTGCTGCTCCGGCACCGGCTGACGGTGGCGGCGGGGCATAAGGTGGAGCAGAAAATGTCGTTGACGCTGTTTATGAAGTACGGGCTGAAGGTGAACGTTCACCGGAGGGACTTGGAGGGGATTGTCGAAAGTATCAGGGGCAAAAACGGAATTTCGCAAGGGATAGATGCTCCGTTAATCGCCGTTGTGAACTGTAAAGGCGGTTGTAACGGAGTTAACGGAGTATAA | 1650 | 53.94 | MDVGLALVILTAVTAYLLWFTFISRSLKGPQMWPLLGSLPGLIENCDRLHDWISDNLRACGGTYQTCIWAFPFFATKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHDLLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIKLRFCPILKQAERNSNPIDLQDVLLRLTFDNICGLAFGKDPMTCAPGFPENGFATAFDRATEASLQRFILPEVLWKFKKWLRLGMEVSLSRSLVHIEEYLSSVIDSRKLELMNQPKDSTPHDDLLSRFMKKKESNYSNAFLRHVALNFILAGRDTSSVALSWFFWLVTLNPLVEEKILREICTVLIETRGNNIPSWLDEPLGFEEIDRLIYLKAALTETLRLYPSVPEDSKHVVADDVLPDGTFVPAGSSVTYSIYSTGRMKSTWGEDCLEFRPERWLTADGKKFIPYDSYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAAGHKVEQKMSLTLFMKYGLKVNVHRRDLEGIVESIRGKNGISQGIDAPLIAVVNCKGGCNGVNGV | 549 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 10104949 | 10106598 | - | Maker00023450 | Lcy13g0700 | 651005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g0700 | 549 | Pfam | Cytochrome P450 | 28 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | SUPERFAMILY | Cytochrome P450 | 21 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | Gene3D | Cytochrome P450 | 24 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | P450 superfamily signature | 458 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | P450 superfamily signature | 449 | 458 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | E-class P450 group I signature | 368 | 386 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | E-class P450 group I signature | 448 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | PRINTS | E-class P450 group I signature | 458 | 481 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0700 | 549 | FunFam | Cytochrome P450 | 21 | 513 | - | - | |
| Lcy13g0700 | 549 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 451 | 460 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy13g0700 | 549 | PANTHER | CYTOCHROME P450 | 18 | 503 | - | - | |
| Lcy13g0700 | 549 | CDD | CYP86A | 67 | 503 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g0110 | Lcy-Chr11:1201933 | Lcy13g0700 | Lcy-Chr13:10104949 | 6.12E-238 | dispersed | |
| Lcy13g0700 | Lcy-Chr13:10104949 | Lcy3g1870 | Lcy-Chr3:45893797 | 1.24E-153 | dispersed | |
| Lcy12g1638 | Lcy-Chr12:36741963 | Lcy13g0700 | Lcy-Chr13:10104949 | 2.33E-296 | wgd | |
| Lcy13g0700 | Lcy-Chr13:10104949 | Lcy5g1119 | Lcy-Chr5:23354334 | 5.22E-94 | wgd | |
| Lcy13g0700 | Lcy-Chr13:10104949 | Lcy5g0812 | Lcy-Chr5:12554633 | 3.85E-115 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g0700 | K15398 | - | csv:101221526 | 1040.41 |