Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0711 ATGCCGGCCATTACTCGAGGAAATCATTGTAAGATCCGAGTGACTGATGGATCTGTAATGGAGTCCACTCCTCCAAAGTGGAAACTTCAACAAAGCCCTGTCTCTGAGCCGGTGAATAAATTGGCTCGACGGTGTCTCCTCAATTCGAGCCCAAACAGACCTCCACATTGCGAAGGAAAAATGTTTAATGATGACTTTCCTAAAACAGCAAAGGAAGTGTTGCACGTTTCGACAGTCCCAACTACAATCCTTTGCCGTGACGATGAACGAAGTAGAATATTCAATTTCTGCAAGGCTTGTTTGGAGCAAGAAAAAGCTGGCAGTTTGTATGTCTGTGGCTGTCCAGGAACAGGCAAATCTTTGTCCATGGACAAAGTGAAAGAGCAGTTGGCTGCTTGGGTGAAGGAGTCGGGTCTTCAGCTGCCAGACACTTTGTCCATAAACTGCGCTTCCTTGGCAAATACGTCTGATATATTCATTAAGATGATGGGTGAAGCACAACCACAGAAGAAAAAGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCTTATACTCCCAAAAGGCAGAGTCATCGTGCAAGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAGGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAACTTTTCCATTTTCAAGATGTATTTTGATAGGAATTGCGAATGCGATCGACTTAGCAGATCGCTTTCTTCCAAAACTTCAGGCACTGAATTGCAAACCTCAGGTTGTAACGTATAGGGCTTATTCCAAGGATCAGATCCTCAAGATTCTTCAACAAAGGTTAATTGCACTGCCTTTCGTTGTCTTTCAACCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTGTCTGGAGATATGAGAAAAGCTCTTGATGTTTGCAGGAATGCCATTGAATTGTTAGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTAAACCATAATGACGGGAGTGACGCTTCAGCACCTGAGTTTGTCAAAAAACAAGAGCCTCAGATTTGGTGGTTGACAGCGATTGGTGGCGACGACCGACGAATGACGATGATTGGTGGGGAAGACCGGCAGTGGTGGGCAACAATGGACGGAGGTGAGGGTGCTGGTAGTGGTAAACTCAGTAGATGTTGGAGGAGTAGATGGTTGACGGCGGTATATGTGGTTGACGACGGCAGGAGAAACAGATGGTCGCGAGGACCGGCGGTGCGAGATTTCCCGATGGAGATGACGGCGTAG 1281 45.59 MPAITRGNHCKIRVTDGSVMESTPPKWKLQQSPVSEPVNKLARRCLLNSSPNRPPHCEGKMFNDDFPKTAKEVLHVSTVPTTILCRDDERSRIFNFCKACLEQEKAGSLYVCGCPGTGKSLSMDKVKEQLAAWVKESGLQLPDTLSINCASLANTSDIFIKMMGEAQPQKKKNGSLTPLQHLQRLYSQKAESSCKKMMLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPKLQALNCKPQVVTYRAYSKDQILKILQQRLIALPFVVFQPQALELCARKVAAVSGDMRKALDVCRNAIELLEVELKASSKELNHNDGSDASAPEFVKKQEPQIWWLTAIGGDDRRMTMIGGEDRQWWATMDGGEGAGSGKLSRCWRSRWLTAVYVVDDGRRNRWSRGPAVRDFPMEMTA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10315239 10321926 - Maker00024027 Lcy13g0711 651016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0711 426 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 57 329 IPR050311 GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER)
Lcy13g0711 426 Coils Coil 308 328 - -
Lcy13g0711 426 Pfam AAA domain 105 225 IPR049945 GO:0016887(InterPro)
Lcy13g0711 426 Pfam Cdc6/ORC-like, ATPase lid domain 264 321 IPR054425 -
Lcy13g0711 426 Gene3D - 257 348 - -
Lcy13g0711 426 FunFam Cell division control protein 64 252 - -
Lcy13g0711 426 Gene3D - 64 256 IPR027417 -
Lcy13g0711 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 321 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0711 Lcy-Chr13:10315239 Lcy8g1760 Lcy-Chr8:44086543 1.99E-235 dispersed
Lcy13g0711 Lcy-Chr13:10315239 Lcy13g0853 Lcy-Chr13:14800366 2.59E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0711 K02213 - csv:101205741 509.22