Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0725 | ATGGCTTCTCTTCCTCGAAAGCAAGCAATCCATGGCTGCTTTCTGCTTCTTCTCCTCTTCCTCTCTCTCCCATCACTGTCCGTCGCTGTCACTAAAGCCGAAGCGTCGTATCTCGCCAATCGTCAACTCCATGCTTTGAGAGAACACGATGAGCTCCCAGATGACTACAAATATGAACTCGACATTCCCGACACTTTTCCACATGAGAGGTTGAAGAAGGCTTATGTTGCCCTTCAAGCTTGGAAAAAGGCCGTGTATTCTGACCCTCAGAACATCACTGCCAATTGGGTTGGGGCTGATGTCTGCTCTTACACTGGCGTTTTTTGTGCTCCGGCGCTTGATGACCCCAAGATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGCTATTTCCCGCCAGAGTTTGGCCTCTTGACCGATTTAGCTTTGGTACATATCAACTCCAATAGGTTTTGTGGGATCATTCCTACTAGCTTTTCTAAGCTCACTCTCATGTATGAGTTTGATATCAGTAACAACCGCTTCGTCGGCAAATTCCCTGAGGTTGTCCTCGAGTGGCCGAACCCTCAGTACCTCGATCTCAGGTACAACGAGTTCGAAGGAGAAATCCCATGGTCACTCTTCACAAAAACGTACGACGTCATATTCATAAACAACAACAGATTCACATCCCAGATCCCGGAAAGCATTGGAAACTCCAGCGTGGCCATCGTGAACTTCGCCAACAACGAGTTCTATGGCTGCATTCCCAAAACCATCGGCCAGATGGCCTCCCTCAAACAGATCCTCTTCATTGGCAATAAGCTCGGCGGCTGTGTCCCGCAAGAGATCGGAAACCTCGCCAATCTGACAGTATTCGACGTCAGCTTCAATGGCCTCATTGGCGAACTGCCAACATCCATTTCGGGGCTGAAGAATTTGGAGGTTGTGGACATCAGTTACAATGAATTGAGGGGTTCTGTTTCTAAGGAGATGTGCGAATTGCCCAAGTTGGAGAACTTCACCGTCGCATTTAATTATTTTGATGAAGTAGATCCAACGTGTATTAGGCCTAAGGGATCCAAGAAACTTTTTGATGATGCACAAAATTGTTTGGCAAATCGACCGGAGCAGAGAGATGCGGACAAATGTTACTCTCTTTTGAAGAACACGGTGGATTGTGCTGGAAGCTGTCCTGAGAATCCACACGGAAAGTTTTCGATACCGTCCAATAGGTTGCCGCCTGAATCGGTTGAGACCCCTGTTCCAGAAGTTGGGTCTCCACCATCTCCATCTGAATCCTCAGTTCCATCCTCCCCAGATGCTCCACCTCCACCGGTCCACTCTCCACCACCACCCGTCCACTCCCCACCACCACCCGTCCACTCCCCTCCACCACCTCCCGTCCACTCCCCACCACCCCCAGTCCACTCCCCGCCACCACCGGTCCACTCTCCACCACCTCCCGTCCACTCCCCACCACCCCCGGTCCACTCGCCACCACCACCAGTCCACTCCCCGCCACCCCCTGTCCACTCTCCCCCACCACCGGTCTTCTCCCCCCCACCACCCCCTATCCACTCTCCCCCACCACCGGTCCATTCCCCACCACCACCGGTCCAATCCCCACCACCACCGATCTACTCTCCACCACCACCGGTCTACTCCCCACCACCACCAACCGCATCTCCTCCTCCTCCGGTCTACTCCCCACCACCACCAACCGCATCTCCTCCTCCTCCTCCCGGTGCTTCTCCGCCGCCATTCGAGGAAGTCATCCTCCCACCAAATATCGGCTTCCAATACGCATCGCCACCTCCACCATTGTTTCCTGGCTATTGA | 1833 | 53.03 | MASLPRKQAIHGCFLLLLLFLSLPSLSVAVTKAEASYLANRQLHALREHDELPDDYKYELDIPDTFPHERLKKAYVALQAWKKAVYSDPQNITANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGYFPPEFGLLTDLALVHINSNRFCGIIPTSFSKLTLMYEFDISNNRFVGKFPEVVLEWPNPQYLDLRYNEFEGEIPWSLFTKTYDVIFINNNRFTSQIPESIGNSSVAIVNFANNEFYGCIPKTIGQMASLKQILFIGNKLGGCVPQEIGNLANLTVFDVSFNGLIGELPTSISGLKNLEVVDISYNELRGSVSKEMCELPKLENFTVAFNYFDEVDPTCIRPKGSKKLFDDAQNCLANRPEQRDADKCYSLLKNTVDCAGSCPENPHGKFSIPSNRLPPESVETPVPEVGSPPSPSESSVPSSPDAPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVFSPPPPPIHSPPPPVHSPPPPVQSPPPPIYSPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPPGASPPPFEEVILPPNIGFQYASPPPPLFPGY | 610 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 10798525 | 10800357 | + | Maker00024095 | Lcy13g0725 | 651030 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0725 | 610 | FunFam | Leucine-rich repeat extensin-like protein 1 | 75 | 236 | - | - | |
Lcy13g0725 | 610 | PRINTS | Proline rich extensin signature | 434 | 450 | - | - | |
Lcy13g0725 | 610 | PRINTS | Proline rich extensin signature | 472 | 497 | - | - | |
Lcy13g0725 | 610 | PRINTS | Proline rich extensin signature | 453 | 470 | - | - | |
Lcy13g0725 | 610 | PRINTS | Proline rich extensin signature | 407 | 428 | - | - | |
Lcy13g0725 | 610 | Gene3D | Ribonuclease Inhibitor | 73 | 240 | IPR032675 | - | |
Lcy13g0725 | 610 | Pfam | Leucine Rich Repeat | 286 | 308 | IPR001611 | GO:0005515(InterPro) | |
Lcy13g0725 | 610 | Pfam | Leucine Rich Repeat | 194 | 211 | IPR001611 | GO:0005515(InterPro) | |
Lcy13g0725 | 610 | MobiDBLite | consensus disorder prediction | 418 | 590 | - | - | |
Lcy13g0725 | 610 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 254 | 348 | - | - | |
Lcy13g0725 | 610 | Pfam | Leucine rich repeat N-terminal domain | 77 | 109 | IPR013210 | - | |
Lcy13g0725 | 610 | Gene3D | Ribonuclease Inhibitor | 241 | 388 | IPR032675 | - | |
Lcy13g0725 | 610 | MobiDBLite | consensus disorder prediction | 402 | 610 | - | - | |
Lcy13g0725 | 610 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 13 | 516 | IPR051582 | - | |
Lcy13g0725 | 610 | SUPERFAMILY | L domain-like | 77 | 355 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0725 | Lcy-Chr13:10798525 | Lcy9g2147 | Lcy-Chr9:46089140 | 1.25E-54 | dispersed | |
Lcy4g0668 | Lcy-Chr4:8106355 | Lcy13g0725 | Lcy-Chr13:10798525 | 4.26E-34 | transposed | |
Lcy13g0725 | Lcy-Chr13:10798525 | Lcy13g1146 | Lcy-Chr13:26469880 | 3.53E-25 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0725 | - | - | - | 0.0 |