Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0725 ATGGCTTCTCTTCCTCGAAAGCAAGCAATCCATGGCTGCTTTCTGCTTCTTCTCCTCTTCCTCTCTCTCCCATCACTGTCCGTCGCTGTCACTAAAGCCGAAGCGTCGTATCTCGCCAATCGTCAACTCCATGCTTTGAGAGAACACGATGAGCTCCCAGATGACTACAAATATGAACTCGACATTCCCGACACTTTTCCACATGAGAGGTTGAAGAAGGCTTATGTTGCCCTTCAAGCTTGGAAAAAGGCCGTGTATTCTGACCCTCAGAACATCACTGCCAATTGGGTTGGGGCTGATGTCTGCTCTTACACTGGCGTTTTTTGTGCTCCGGCGCTTGATGACCCCAAGATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGCTATTTCCCGCCAGAGTTTGGCCTCTTGACCGATTTAGCTTTGGTACATATCAACTCCAATAGGTTTTGTGGGATCATTCCTACTAGCTTTTCTAAGCTCACTCTCATGTATGAGTTTGATATCAGTAACAACCGCTTCGTCGGCAAATTCCCTGAGGTTGTCCTCGAGTGGCCGAACCCTCAGTACCTCGATCTCAGGTACAACGAGTTCGAAGGAGAAATCCCATGGTCACTCTTCACAAAAACGTACGACGTCATATTCATAAACAACAACAGATTCACATCCCAGATCCCGGAAAGCATTGGAAACTCCAGCGTGGCCATCGTGAACTTCGCCAACAACGAGTTCTATGGCTGCATTCCCAAAACCATCGGCCAGATGGCCTCCCTCAAACAGATCCTCTTCATTGGCAATAAGCTCGGCGGCTGTGTCCCGCAAGAGATCGGAAACCTCGCCAATCTGACAGTATTCGACGTCAGCTTCAATGGCCTCATTGGCGAACTGCCAACATCCATTTCGGGGCTGAAGAATTTGGAGGTTGTGGACATCAGTTACAATGAATTGAGGGGTTCTGTTTCTAAGGAGATGTGCGAATTGCCCAAGTTGGAGAACTTCACCGTCGCATTTAATTATTTTGATGAAGTAGATCCAACGTGTATTAGGCCTAAGGGATCCAAGAAACTTTTTGATGATGCACAAAATTGTTTGGCAAATCGACCGGAGCAGAGAGATGCGGACAAATGTTACTCTCTTTTGAAGAACACGGTGGATTGTGCTGGAAGCTGTCCTGAGAATCCACACGGAAAGTTTTCGATACCGTCCAATAGGTTGCCGCCTGAATCGGTTGAGACCCCTGTTCCAGAAGTTGGGTCTCCACCATCTCCATCTGAATCCTCAGTTCCATCCTCCCCAGATGCTCCACCTCCACCGGTCCACTCTCCACCACCACCCGTCCACTCCCCACCACCACCCGTCCACTCCCCTCCACCACCTCCCGTCCACTCCCCACCACCCCCAGTCCACTCCCCGCCACCACCGGTCCACTCTCCACCACCTCCCGTCCACTCCCCACCACCCCCGGTCCACTCGCCACCACCACCAGTCCACTCCCCGCCACCCCCTGTCCACTCTCCCCCACCACCGGTCTTCTCCCCCCCACCACCCCCTATCCACTCTCCCCCACCACCGGTCCATTCCCCACCACCACCGGTCCAATCCCCACCACCACCGATCTACTCTCCACCACCACCGGTCTACTCCCCACCACCACCAACCGCATCTCCTCCTCCTCCGGTCTACTCCCCACCACCACCAACCGCATCTCCTCCTCCTCCTCCCGGTGCTTCTCCGCCGCCATTCGAGGAAGTCATCCTCCCACCAAATATCGGCTTCCAATACGCATCGCCACCTCCACCATTGTTTCCTGGCTATTGA 1833 53.03 MASLPRKQAIHGCFLLLLLFLSLPSLSVAVTKAEASYLANRQLHALREHDELPDDYKYELDIPDTFPHERLKKAYVALQAWKKAVYSDPQNITANWVGADVCSYTGVFCAPALDDPKIEVVAGIDLNHGDIAGYFPPEFGLLTDLALVHINSNRFCGIIPTSFSKLTLMYEFDISNNRFVGKFPEVVLEWPNPQYLDLRYNEFEGEIPWSLFTKTYDVIFINNNRFTSQIPESIGNSSVAIVNFANNEFYGCIPKTIGQMASLKQILFIGNKLGGCVPQEIGNLANLTVFDVSFNGLIGELPTSISGLKNLEVVDISYNELRGSVSKEMCELPKLENFTVAFNYFDEVDPTCIRPKGSKKLFDDAQNCLANRPEQRDADKCYSLLKNTVDCAGSCPENPHGKFSIPSNRLPPESVETPVPEVGSPPSPSESSVPSSPDAPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVFSPPPPPIHSPPPPVHSPPPPVQSPPPPIYSPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPPGASPPPFEEVILPPNIGFQYASPPPPLFPGY 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10798525 10800357 + Maker00024095 Lcy13g0725 651030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0725 610 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Lcy13g0725 610 PRINTS Proline rich extensin signature 434 450 - -
Lcy13g0725 610 PRINTS Proline rich extensin signature 472 497 - -
Lcy13g0725 610 PRINTS Proline rich extensin signature 453 470 - -
Lcy13g0725 610 PRINTS Proline rich extensin signature 407 428 - -
Lcy13g0725 610 Gene3D Ribonuclease Inhibitor 73 240 IPR032675 -
Lcy13g0725 610 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515(InterPro)
Lcy13g0725 610 Pfam Leucine Rich Repeat 194 211 IPR001611 GO:0005515(InterPro)
Lcy13g0725 610 MobiDBLite consensus disorder prediction 418 590 - -
Lcy13g0725 610 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Lcy13g0725 610 Pfam Leucine rich repeat N-terminal domain 77 109 IPR013210 -
Lcy13g0725 610 Gene3D Ribonuclease Inhibitor 241 388 IPR032675 -
Lcy13g0725 610 MobiDBLite consensus disorder prediction 402 610 - -
Lcy13g0725 610 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 516 IPR051582 -
Lcy13g0725 610 SUPERFAMILY L domain-like 77 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0725 Lcy-Chr13:10798525 Lcy9g2147 Lcy-Chr9:46089140 1.25E-54 dispersed
Lcy4g0668 Lcy-Chr4:8106355 Lcy13g0725 Lcy-Chr13:10798525 4.26E-34 transposed
Lcy13g0725 Lcy-Chr13:10798525 Lcy13g1146 Lcy-Chr13:26469880 3.53E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0725 - - - 0.0