Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g0728 | ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCGACCGTATTCCTCCACTTCCTCTCCCTCCTCGACTTCCTCAAACGCCTAATTCTCTCCCTCTTCCGGCTCCTCGGCCTCCCGGAGTTTCTCCACTCCTCCGACGCCCTCCCGCCGGACCTCCGCTTCCCCCTCAACCCGCCTCCCTCCGCCCTCCTCCTCCGCGAATTCCTCCCCGTCGTGAAATTCTCCGATCTCCCCCACCTCTCCGCCGGCGCCGAGAGCTGCGCTGTCTGCCTCTACGACTTCGAGGGCGCCGAGGAGATCCGGCGGCTCACCAACTGCAGGCACATATTCCACCGGGGGTGTGTGGACCGTTGGATGGATCACGACCAGAAGACGTGTCCGCTGTGCAGAACGCCGTTCGTGCCGGATGGGATGATGGACGAGTTCAATCAACGCCTCTGGGCCGCCTCTGGCGTCGCTGAGTTTGACTCCGAGTTCAACTCGTTTGCAATGGCGATGGTTGGACGGCGACGACGCTTCCGGTGGTGGTTGGTCGTCGACGGCAAGAAAAGGATCGGAGATGAAGAGGGAAAGAGTGGTCGAGAGACCATGAGGGAGGAATGA | 606 | 61.72 | MGFPVGCTEVFFPTVFLHFLSLLDFLKRLILSLFRLLGLPEFLHSSDALPPDLRFPLNPPPSALLLREFLPVVKFSDLPHLSAGAESCAVCLYDFEGAEEIRRLTNCRHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGVAEFDSEFNSFAMAMVGRRRRFRWWLVVDGKKRIGDEEGKSGRETMREE | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 10926394 | 10928253 | - | Maker00024013 | Lcy13g0728 | 651033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g0728 | 201 | Pfam | Ring finger domain | 87 | 131 | IPR001841 | - | |
| Lcy13g0728 | 201 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 137 | IPR013083 | - | |
| Lcy13g0728 | 201 | SMART | ring_2 | 88 | 130 | IPR001841 | - | |
| Lcy13g0728 | 201 | SUPERFAMILY | RING/U-box | 87 | 137 | - | - | |
| Lcy13g0728 | 201 | ProSiteProfiles | Zinc finger RING-type profile. | 88 | 131 | IPR001841 | - | |
| Lcy13g0728 | 201 | CDD | RING-H2_RHA1-like | 88 | 134 | - | - | |
| Lcy13g0728 | 201 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 10 | 142 | - | - | |
| Lcy13g0728 | 201 | FunFam | RING-H2 finger protein ATL73 | 66 | 138 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1983 | Lcy-Chr11:43425795 | Lcy13g0728 | Lcy-Chr13:10926394 | 1.77E-42 | dispersed | |
| Lcy13g0728 | Lcy-Chr13:10926394 | Lcy2g0847 | Lcy-Chr2:7651693 | 3.89E-12 | dispersed | |
| Lcy5g2156 | Lcy-Chr5:44553779 | Lcy13g0728 | Lcy-Chr13:10926394 | 1.95E-12 | transposed | |
| Lcy8g1343 | Lcy-Chr8:40199244 | Lcy13g0728 | Lcy-Chr13:10926394 | 7.83E-17 | transposed | |
| Lcy12g1628 | Lcy-Chr12:36599203 | Lcy13g0728 | Lcy-Chr13:10926394 | 8.81E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g0728 | K16281 | - | csv:101220424 | 258.84 |