Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0741 ATGGAGTCAGGTTCTTTTGATCAGAACATCAGGGGATTGCCCACTCATGGTGGTCGATACATTCAATACAATGTCTATGGGAATCTATTTGAAGTTTCTAGGAAGTATATTCCACCAATAAGGCCTGTTGGAAGAGGAGCTTATGGTATTGTCTGTGCTGCTTTGAATTCAGAAACAAATGAGGAGGTTGCAATTAAGAAGGTTGGCAAAGCATTTGACAATAGAATTGATGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATTATTGCTCTTAAAGATATTATAAGACCTCCTCAGGAGGAGAATTTCAATGATGTGTACCTTGTTTATGAATTGATGGATACTGATCTAAATCAGATAATAAGGTCCAACCAATCGTTGACTGATGATCATTGCCGGTACTTTCTATACCAGTTGTTACGAGGGCTCAAGTACATACATTCTGCTAATGTTCTGCATCGTGATCTGAAACCCAGCAATTTGTTCCTCAATGCAAATTGTGACCTGAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACCGAGTATGTTGTTACTCGCTGGTATCGTGCACCGGAATTGCTACTTAATTGTTCAGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGACAACCACTGTTTCCTGGAAGAGATTATGTCCATCAACTAAAACTTATTACTGAGCTCATTGGATCACCCGACGACTCGAGCCTCGGATTCTTACGCAGTGACAATCCACGAAGATATTTTAGACATCTTCCCCACTTCCCCAGGCAACAGTTTTCCACTAGATTTCCTACCATGTCTCCCGCTGCTATCGACTTGCTTGAGAAGATGCTTGTCTTTGATCCTACTAAGCGCATTACAGTTGATGAGGCGCTGTGTCATCCATACTTAGCACCCCTTCATGATATCAATGAGGAGCCAGTATGTCCGATGCCTTTCAGTTTTGACTTCGAGCAACCGTCGTACACCGAAGAAAACATCAAGGAACTTGTATGGAGAGAATCTGTGAAGTTCAACCCGGATCCCGCTTATTGA 1113 41.42 MESGSFDQNIRGLPTHGGRYIQYNVYGNLFEVSRKYIPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGKAFDNRIDAKRTLREIKLLRHMDHENIIALKDIIRPPQEENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRYFLYQLLRGLKYIHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPRQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDINEEPVCPMPFSFDFEQPSYTEENIKELVWRESVKFNPDPAY 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11249957 11255930 - Maker00023590 Lcy13g0741 651046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0741 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 359 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy13g0741 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0741 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0741 370 CDD STKc_TEY_MAPK 30 366 - -
Lcy13g0741 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0741 370 SMART serkin_6 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0741 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
Lcy13g0741 370 FunFam Mitogen-activated protein kinase 121 350 - -
Lcy13g0741 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Lcy13g0741 370 FunFam Mitogen-activated protein kinase 22 131 - -
Lcy13g0741 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0741 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Lcy13g0741 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0257 Lcy-Chr11:3699002 Lcy13g0741 Lcy-Chr13:11249957 3.19E-182 dispersed
Lcy13g0741 Lcy-Chr13:11249957 Lcy13g1675 Lcy-Chr13:35711936 2.97E-189 dispersed
Lcy11g0267 Lcy-Chr11:3913183 Lcy13g0741 Lcy-Chr13:11249957 1.80E-212 transposed
Lcy10g0577 Lcy-Chr10:15544757 Lcy13g0741 Lcy-Chr13:11249957 1.42E-22 wgd
Lcy12g1620 Lcy-Chr12:36495400 Lcy13g0741 Lcy-Chr13:11249957 6.10E-233 wgd
Lcy13g0741 Lcy-Chr13:11249957 Lcy5g1356 Lcy-Chr5:32393205 1.26E-34 wgd
Lcy13g0741 Lcy-Chr13:11249957 Lcy7g1603 Lcy-Chr7:31271690 4.51E-29 wgd
Lcy13g0741 Lcy-Chr13:11249957 Lcy7g1245 Lcy-Chr7:15588274 1.25E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65562 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0741 K20600 - csv:101215189 731.865