Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0847 ATGGCCTCTACCTCGAGTTCCCCTTCGCTGAATGCTGACCAATTACCGGTTCTTCCCGTCGTCACCTCCACCGTGACTACCCCTACTGCTACACCTGGTACCCCTCACCGCCCTAATCTGAATACATCTACACCTCTATCGTCAAACCCTACCCGCCCCTTAAACCCTAATATTCCTCCATTTCAGTCCACCTTTCTCCAGCATCCTAACTTCACGAATACCTCTGGCTTCTTCAACAACTCATTTGTCTCCGCTGGTGAAAAGAAAATTTTGGATTTCCTTATATGGCTGATAGGACCTAGTTGTCAAACACGTTATCGTGCGTTCTATCAGTTGACTGTTAGAGCCCAGTTTCAGGCGAGTGGCGAGGACAGTGACTTGGCTAGGCTATGGGATAGAGCTGCAAATCATGTTCCTAGAAGTCTAGGATCGAGTTTTCTAGTTTCATATGAAAATTTAATACCGAATCGAAACTTTTACTTATCTGATGAGACAATGCCCAAGTTAACTACAATTACGCCAGTTATGCAGTTGACAGCGTACTCTGCGTTGCCAATCAATGGCGTAAAACTACAATTTCTACTCGAGATCAAGTCCTCTCCGTATTCAAAATGGCTTCTCTTTGACTCGAACGAGCCGTTGCTGCTGCTTCAGATTCCGCCGACAGCCATACCCAAAATGGAGAAGAAGCTGTTCAGAGCCACTTGCTCCACCGATATCTGCTTCGGCATTTTCATTTCCTTCGCCTTAATTTCGATTTTCCTCTGTTTCGATTACTCCACTTTCCATTCCTCCAACAATGCCGTCCTCAGTTCCTCTTTAAACCCTACCGTCTTCACCACCGACAACCCGAACAGATTGCTCCTCAAACCTCCCGCCGCCGGCCGGACCGTCGACTCTGAATCTGACGCCGCCGATCCTTGCTCCGGTCGCTACTTGTTCATCCAGAACATTCCGAGTCGATTCAATTTCGATTTGATCAGAAACTGCCAATCTCTTACAAGAGGAACCGACAAATCCGATATGTGTCCGTATTTGGTGAACTACGGCCTCGGTCCTGAAATTGAAGATTCTCGGGGGGTTTTCTTCAACCATAGTTGGTTCAGGACGAATCAATTTCTGTTGGAGGTCATTTTCCATAACAAGATGAAGCAGTATAAATGCTTGACGAACGATTCGGCTATGGCGTCGGCCATTTATGTACCGTTCTACGCTGGTCTGGATATCAGCCATTACCTATGGAACCCGAACATCTCGGTTAGGGATTCTTCCGCTAGGGATTTTCTGAGTCTGATTTCTGAAAAACCTGAGTGGAAGAGGATGTTTGGGAGGGATCATTTCTTCGTTGCCGGAAGAATTTCTTGGGATTTCAGAAGGCAAACGGATGAAGTTTCTGATTGGGGAAGTAAACTCCGATTCTTGCCTGAATCTCACAATATGACGATGCTCTCTGTAGAAGCAAGCTCGTGGAAGAACGATTTTGCGATTCCGTATCCGACTTATTTTCATCCATCAAAACGGAGTGAAGTTATTGAATGGCAGAGCCTGATGAGGGCCAAACGGCGCCGCCATTTGTTCACCTTCGCCGGCGCTCCACGGCCGGAGCTCAGAGACTCCATTCGCGGTATCGTAATCGAGCAATGTCGTGGTTCGTCTCTCTGTAAATTCATAGATTGCAGTTCCGATGGGGTTAATTGTGATGATCCTGTTACCACCATGAAAGAGTTTGAGAGCTCGATCTTCTGCTTGCAGCCTCCAGGAGATTCTTACACTAGAAGATCAATATTCGATTCAATTTTAGCTGGATGTATTCCAGTTTTCTTTCATCCAGGTACTGCATATTCCCAATATTTATGGCATTTTCCTGAGAACCAAACAGCTTATTCTGTGTATATACCTGTGAGGGATGTGAAAAGCTGGAATGAAAGCATAGAGGGGATTTTGAGTGAGATTCCTAAGGACAGAGAATCCGCCATGAGAGAAGAGGTTATAAGAATCATTCCAAATATTGTTTATTCAGATCCCAGATCGAAATTGGGGGATTTTGAAGATGCATTTGATTTAGCAGTTAAAGGGATTCTTGATAGAGTTGAAGATGTTAGAAGGAAGATCAGAGAGGGAAGAGATCCTAGTGAAGGATTTGACGATCCTGATCATTTTAAGTTTCATTTTGGTAGGGGTGTAAATTTTTCGGGTCGGGTCGGGTCAGTTTTTTTTCTGCAGCGTTTCGTCGTCTTCTCGTCTTCGAATTCCTTCAAGCAAACGGCGCATTCTAGGGCACTCTCAAGTTGTGAAGCATGTGTTAAATCCTTTTACCCATTGTTGGAATCAACAAAACACTCGTTGGAAACTTGTTGGGCACCAGATCTCGCTGGAAAACACCCACGAACAAAGACCCATGTGAATTGCTGCTACACCAACGTCGTCGTGGGTCCCGTGCTCGCTGGAGAAGATAATCGGAGGTGGGGAGATGCACTGCTGGCCGGCGGATTGCTAAAGACGAAGATGAAAAAAAAACTTGTTGTGGAAGGAGATGAAGAATACCAATCGGGCAAGAGAAGGGAAGACGAAGACGAGGAAGACGAAGTTTACTGTGCGGAAGAAAACGGCGAAAGCGAATTGAAACCAAAAGCGAATTCTTGA 2643 45.59 MASTSSSPSLNADQLPVLPVVTSTVTTPTATPGTPHRPNLNTSTPLSSNPTRPLNPNIPPFQSTFLQHPNFTNTSGFFNNSFVSAGEKKILDFLIWLIGPSCQTRYRAFYQLTVRAQFQASGEDSDLARLWDRAANHVPRSLGSSFLVSYENLIPNRNFYLSDETMPKLTTITPVMQLTAYSALPINGVKLQFLLEIKSSPYSKWLLFDSNEPLLLLQIPPTAIPKMEKKLFRATCSTDICFGIFISFALISIFLCFDYSTFHSSNNAVLSSSLNPTVFTTDNPNRLLLKPPAAGRTVDSESDAADPCSGRYLFIQNIPSRFNFDLIRNCQSLTRGTDKSDMCPYLVNYGLGPEIEDSRGVFFNHSWFRTNQFLLEVIFHNKMKQYKCLTNDSAMASAIYVPFYAGLDISHYLWNPNISVRDSSARDFLSLISEKPEWKRMFGRDHFFVAGRISWDFRRQTDEVSDWGSKLRFLPESHNMTMLSVEASSWKNDFAIPYPTYFHPSKRSEVIEWQSLMRAKRRRHLFTFAGAPRPELRDSIRGIVIEQCRGSSLCKFIDCSSDGVNCDDPVTTMKEFESSIFCLQPPGDSYTRRSIFDSILAGCIPVFFHPGTAYSQYLWHFPENQTAYSVYIPVRDVKSWNESIEGILSEIPKDRESAMREEVIRIIPNIVYSDPRSKLGDFEDAFDLAVKGILDRVEDVRRKIREGRDPSEGFDDPDHFKFHFGRGVNFSGRVGSVFFLQRFVVFSSSNSFKQTAHSRALSSCEACVKSFYPLLESTKHSLETCWAPDLAGKHPRTKTHVNCCYTNVVVGPVLAGEDNRRWGDALLAGGLLKTKMKKKLVVEGDEEYQSGKRREDEDEEDEVYCAEENGESELKPKANS 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14547031 14554650 + Maker00026230 Lcy13g0847 651152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0847 880 MobiDBLite consensus disorder prediction 25 51 - -
Lcy13g0847 880 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 296 696 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
Lcy13g0847 880 MobiDBLite consensus disorder prediction 25 60 - -
Lcy13g0847 880 MobiDBLite consensus disorder prediction 843 880 - -
Lcy13g0847 880 MobiDBLite consensus disorder prediction 843 859 - -
Lcy13g0847 880 Pfam Exostosin family 308 644 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0847 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0847 Lcy-Chr13:14547031 Lcy6g0226 Lcy-Chr6:2046245 3.86E-92 dispersed
Lcy11g1103 Lcy-Chr11:33061590 Lcy13g0847 Lcy-Chr13:14547031 1.79E-167 transposed
Lcy12g2076 Lcy-Chr12:42136021 Lcy13g0847 Lcy-Chr13:14547031 6.43E-160 transposed
Lcy1g0787 Lcy-Chr1:6688365 Lcy13g0847 Lcy-Chr13:14547031 1.07E-98 transposed
Lcy6g2072 Lcy-Chr6:43898560 Lcy13g0847 Lcy-Chr13:14547031 1.14E-86 transposed
Lcy1g2648 Lcy-Chr1:49911389 Lcy13g0847 Lcy-Chr13:14547031 1.89E-06 wgd
Lcy12g1112 Lcy-Chr12:21118292 Lcy13g0847 Lcy-Chr13:14547031 4.46E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1075 . Blo12g00162 . . . . . . Cmo08g00846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed09g0011 . . Cma08g00875 . . . . . Bhi12g02112 Tan06g1947 Cmetu06g2696 Lac12g1529 Hepe03g0625 . Lcy13g0847 . . . . . . . Lsi09g01610 . . Cme11g02209
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003717 3 1 2 2 2 1 4 1 1 1 1 1 3 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 1 46