Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0853 ATGATTATTATCTCCAGGAATGTGCGTGGCATGGGCTCATGGAAAAAGAGAGCCCTTATTAAAGATTTTCTCTCTTCTCAGAACCCCACTCTGGTCATTATTCAAGAAACCAAGATGGCCGATATTGACCAGAAGATCATTAAATCTGTTTGGAGCTCGAGGAACATAGCCTGGGCTTCCATTGATGCTATCGGTGCCTCTGGAGGGATATTGATCCTTTGGAATGAATCCTCTTTTGTCGTTAAGGAGATTATTGAAGGTATTTTCTCTCTCTCCATACATCTTTCACTTGCTGATGGCTTATCTTTTTGGATCACAGGAGTATATGGCCCCAACTCCTCCAGAGAGAGGCGTTTATTCTGGAAGGAATTAACAGATCTCCAGGCTCTTTGTCCCCCTAACTGGATTTTGGGGGGCGACTTTAATGTCATCCGATGGACATGGGAAAAATCCTCTTATAATGTGCCAACCCGAGCCATGAAGAAATTCAACCGTTTCATTGTGGACAATGGCCTTATAGACATTCCCCTCGCCAATGGAAAGTACACTTGGGGCCCGTGGCGTGCTATCCACAAATCAAAATACCTTATATATGATCACATTGACATTAGAGTTGGGAAAGGTGACAAAACGCTCTTTTGGGAGGACAATTGGCTGGGGTCTTCTCCTTTACAGTCCAAGTTCCCCTCTCTATTCAATCTCTCGCTCAAAAAGGATGCCCTTATAGCAGAATTATGGGAACCAACCAATGGGGCATGGAACCTTCATTTAAGAAGACACCTCTATGATTCTGAAATTCTGGAATGGGCTTTATTATCTCATCAACTGTCCTCTTTCTCCTTCAACAATACTGAAGACACTTGGGTTTGGAATCTGGAACAAAACGGCTATTTTTCTACTGGATCCCTCACCCAAAAATTGGCTTCACAAGCTTACCAATCCAGTAATGATCTTTATGGCCAGCTGTGGAAGGGTCTTATGCCGAAAAAAGTTAAGTTCTTCATGTGGGAGCTCAGCCACAAGTGTATTAATACTGCAGATGTCATTCAGAGGCGATTCCCCAACTCCTCATTATCTCCTAGCTGCTGCTGCTTGTGTAACAAGGCTGCCGAATCACAAATTCATATCTTCAGTCGCTGTGAATATGCTGCATCTTTCTGGGACCACATTCAAGTCGCGTTTGGTTGGCAATTTGCTCGTCCGGGTGATACCCCTCCCCCCTTTCCTATCCCCTACAGAGCACCATTTGACACAAAGATGTCTCGAAGATCGTCTAGGTTAGTGGAAAAAGCTAGGGAATATTTAGAGAAAACCACAATTAGTGAAACTGCAAAATCGTCCAGAACTAAGAGACGTGGTGTATCGGGGGGAAGCCATAAATCTTCTAGACGAAATCAGAAGTTGAAGCAGAATAATGAGATGAAGTTGAATGAAGTTCTGTCCGAGCAATTAGAAGGGAAGAAGAGAAAGACTTGTAGTAAGAGTTCAGTGGTCACAAGAGCAGCTGCTTCAAAGAATTTCGTGTTTGAAGGGATCAAAAAAGGGGGTGGGAGATCAATGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGAGGTGAATTTGAGGTTGGTGACGATGTCTATGTGAAGAGGAGAGAAGATGCAAGCTCTGACGACGAAGATCCTGAAGTTGAGGAGTGCAAAGTGTGCTTTAAGTCTGGGGAGGCTATAATGATTGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGGATTGTTTGAAGCCGCCCATGAAGGAGGTCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAAGAGGTTCAGTTGCCAAATCCTCCAGAAGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGGCGGGTGACTTGTGGGCTGCTCACATTGAAAGATTATGGAAAGAAGCAAATGGTATCTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAATGGGAAGGCAATCACATAACTTGAAGAGAGAGCTTTATCTAACTAATGACTATGCAGATATTGAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGGATCCTAAAGACTATAATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAGTATGACATTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAAAGAGGATGGTGAAGATAGTGACAGAGACTGGAAGTTGGACCAAAATGCAGACTTTGATTCAGATGGAGATGTGGAATATGAAGAAGAGAGAGCACAAATTTTACAATCTCGAATTTGGTCAAACACAACCCATGAATTGGCTGCGAATTCAAGGGAAGGACGATTTCGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCAGAGCTTATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAGGAGATAGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGACATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCATCACCAGAAAATATATACAGGGTTATATATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAAGAATTGTCAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACACTATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAACACCATGGACCTTCCTGAGAAGTTGCTTCCTCGGATTTCAAGCCGAATGGGTATCAAAAAGCTTTGTTTTGGCCCCTATAACCATCAACAACTTCAAGAAATCATTTTGAGTCGCCTCGAAGGAATTGACGCATTTGAAAAACAAGCTATTGAATTTGCATCAAGAAAGGTTGCTGCTATTTCAGGAGACGCACGTCGTGCTCTGGGGATATGTATGTGTGCAGCTGAAATTAAGGATTATCATATAAAGAAGCTGAGTTTGACTTCCAACAACGATATGAAAGGCGAGGCGGCACTTTCTTGCCTCAAGGCTTACGCCTTGAAGGTAAAAAATGAGGCTTACGCCTCTATTAAGAGAGGCGTAAGCCTCTGTTCCCACGCCTTTGAGGCGTTGAGGCTAAGCCTCTCTATTGTGTTGGTGGGCTTCATGGGAGATGGGCCCATTAATGCAGTGCATGACATCGGGCAATTAATAAATGTATCTCTTGAATCAACTAAGAAGCTTTTTATATATGATGCTCAAGAGGTGCTGGAAGTTTCTTCTAGGTTCAACTGCAAGATGGAAAATCTTCCGATTTTGTATCTTGGGCTTCCTTTGGGAGGTCATCCGAATTCTATTTCTTTTTGGCAACCAGTAAGTATTGAGCTGGAGCGTATGTTGCGGAATTTTTTCTGGGAAGGAAAGGAAGGAGGTAAGATCAATCATTTAGTCCGATGGAATTTGGTTTCTAAGTCTCAAAAAGATGGTGGCTTAGGAATTGGTGCTCTAAAGCATCGAAACCTTGCATTGATTGCTAAATGGGGGTGGCGCTTTATGAATGAGCCTCATGCTTTTTGGAGGAAAGTAATCATCAGTATTCATGGTAGTTCTTCATTTGAATGGCACACGGTAGGTAAGCATGTTGCTAGTCTTAGAAGCCCTTGGATGAATATTTCTAAAGTTTGGAAGAAGTTCGAAGCTTTTGCAAGTTTCAAATTGGGTAATGGTCGGCGAACTTTTTTCTGGCATGACATTTGGTGTGGAGAGGTTTCTCTTAAGTCTCATTTTCCAAGACTATTTACTATTTCCTCGTCACCTAATGGTTCAGTCTCGGAATTTTGGGATTGTCAACATAATTCTTGGTATATTGTTTCTCGAAGATTTCTAAAGGATGAAGAAATTGCGGATTTACAATCTTTGTTAGGTGTTTTGGACTCTTTGGTGGTTGGTTCATCTGATGATGCTCGTGTTTGGTCTCTTGAAAATTCTGGTCAGTTTACCGTTAGCTCTTTGTCTCATCAACTTGGTTCGAGTTTCCCCATTCAATCGGATTTGTTTTGGGCCATTTGGAAATCTAAAAGCCCTAAACGAATAAATATTTTGATGTGGATTATTTTGAATGGTAGTTTGAATACTTCTGATGTTCTTCAAAGAAAATTGTCGTTCTTCAGCTTATTTCCTTCGATTTGTCCTCTTTGTTTGAAGGCAGGAGACTCCGCATTGCATCTGTTCTTTGAGTGTGCTTATTCACAACTTTGTTGGTCAAAGTTCTTTGCTATTTTCAATTTGCAGTGGGTTTTTTCAAATTCCGTAAAAGAGAATGTGCTTCAACTGCTTATTGGTCCTTCTTTTTCTTCAAGACCGAGATTATTATGGATTAATGGTGTTAAAGCTTTGATATCAGAAATTTGGTTGGAAAGAAATCAGAGGGTTTTTGAAGATAAAGCGTGGCATTCTTTAGCTCGTCTAGAATCAGCTTGCTTAAAGGCTTCTTCCTGGTGCACTCTTTCTAAATCTTTTGTAGCTTTCTCTTCACAGGATATTTGTTTTAATTGA 4770 41.34 MIIISRNVRGMGSWKKRALIKDFLSSQNPTLVIIQETKMADIDQKIIKSVWSSRNIAWASIDAIGASGGILILWNESSFVVKEIIEGIFSLSIHLSLADGLSFWITGVYGPNSSRERRLFWKELTDLQALCPPNWILGGDFNVIRWTWEKSSYNVPTRAMKKFNRFIVDNGLIDIPLANGKYTWGPWRAIHKSKYLIYDHIDIRVGKGDKTLFWEDNWLGSSPLQSKFPSLFNLSLKKDALIAELWEPTNGAWNLHLRRHLYDSEILEWALLSHQLSSFSFNNTEDTWVWNLEQNGYFSTGSLTQKLASQAYQSSNDLYGQLWKGLMPKKVKFFMWELSHKCINTADVIQRRFPNSSLSPSCCCLCNKAAESQIHIFSRCEYAASFWDHIQVAFGWQFARPGDTPPPFPIPYRAPFDTKMSRRSSRLVEKAREYLEKTTISETAKSSRTKRRGVSGGSHKSSRRNQKLKQNNEMKLNEVLSEQLEGKKRKTCSKSSVVTRAAASKNFVFEGIKKGGGRSMKRVYYQKVVFDGGEFEVGDDVYVKRREDASSDDEDPEVEECKVCFKSGEAIMIECDDCLGGFHLDCLKPPMKEVPEGDWICGFCEATKMGKEVQLPNPPEGKKRVRTMREKLLAGDLWAAHIERLWKEANGIYQCKVRWYIIPEETAMGRQSHNLKRELYLTNDYADIEMESLLRLCQVMDPKDYNNAKEGDDIFLCEYEYDIRWHSFKRLAEIDKEDGEDSDRDWKLDQNADFDSDGDVEYEEERAQILQSRIWSNTTHELAANSREGRFRGLQKIGAKKIPELIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGHIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSDVKNCQEDDRPCILLIDELDLLVTRNQSVLYTILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIKKLCFGPYNHQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALGICMCAAEIKDYHIKKLSLTSNNDMKGEAALSCLKAYALKVKNEAYASIKRGVSLCSHAFEALRLSLSIVLVGFMGDGPINAVHDIGQLINVSLESTKKLFIYDAQEVLEVSSRFNCKMENLPILYLGLPLGGHPNSISFWQPVSIELERMLRNFFWEGKEGGKINHLVRWNLVSKSQKDGGLGIGALKHRNLALIAKWGWRFMNEPHAFWRKVIISIHGSSSFEWHTVGKHVASLRSPWMNISKVWKKFEAFASFKLGNGRRTFFWHDIWCGEVSLKSHFPRLFTISSSPNGSVSEFWDCQHNSWYIVSRRFLKDEEIADLQSLLGVLDSLVVGSSDDARVWSLENSGQFTVSSLSHQLGSSFPIQSDLFWAIWKSKSPKRINILMWIILNGSLNTSDVLQRKLSFFSLFPSICPLCLKAGDSALHLFFECAYSQLCWSKFFAIFNLQWVFSNSVKENVLQLLIGPSFSSRPRLLWINGVKALISEIWLERNQRVFEDKAWHSLARLESACLKASSWCTLSKSFVAFSSQDICFN 1589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14800366 14818506 + Maker00026232 Lcy13g0853 651158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0853 1589 Gene3D Endonuclease/exonuclease/phosphatase 1 212 IPR036691 -
Lcy13g0853 1589 SMART BAH_4 592 732 IPR001025 GO:0003682(InterPro)
Lcy13g0853 1589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 539 615 IPR013083 -
Lcy13g0853 1589 Pfam BAH domain 641 730 IPR001025 GO:0003682(InterPro)
Lcy13g0853 1589 Pfam PHD-finger 561 604 IPR019787 -
Lcy13g0853 1589 Pfam ATPase family associated with various cellular activities (AAA) 859 1002 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy13g0853 1589 FunFam Origin recognition complex subunit 1 811 1009 - -
Lcy13g0853 1589 Pfam Endonuclease/Exonuclease/phosphatase family 16 165 IPR005135 GO:0003824(InterPro)
Lcy13g0853 1589 FunFam Origin recognition complex subunit 1 556 623 - -
Lcy13g0853 1589 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 610 1077 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Lcy13g0853 1589 Pfam zinc-binding in reverse transcriptase 1405 1492 IPR026960 -
Lcy13g0853 1589 Pfam zinc-binding in reverse transcriptase 314 387 IPR026960 -
Lcy13g0853 1589 SMART PHD_3 560 605 IPR001965 -
Lcy13g0853 1589 MobiDBLite consensus disorder prediction 439 475 - -
Lcy13g0853 1589 SUPERFAMILY FYVE/PHD zinc finger 547 609 IPR011011 -
Lcy13g0853 1589 Pfam AAA lid domain 1031 1066 IPR041083 -
Lcy13g0853 1589 SMART AAA_5 854 1007 IPR003593 GO:0016887(InterPro)
Lcy13g0853 1589 Gene3D - 810 1009 IPR027417 -
Lcy13g0853 1589 ProSiteProfiles BAH domain profile. 605 732 IPR001025 GO:0003682(InterPro)
Lcy13g0853 1589 ProSiteProfiles Zinc finger PHD-type profile. 558 607 IPR019787 -
Lcy13g0853 1589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 824 1066 IPR027417 -
Lcy13g0853 1589 ProSitePatterns Zinc finger PHD-type signature. 561 604 IPR019786 -
Lcy13g0853 1589 Gene3D - 628 782 IPR043151 -
Lcy13g0853 1589 SUPERFAMILY DNase I-like 1 201 IPR036691 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0275 Lcy-Chr11:4033279 Lcy13g0853 Lcy-Chr13:14800366 1.27E-147 dispersed
Lcy12g1893 Lcy-Chr12:40160460 Lcy13g0853 Lcy-Chr13:14800366 1.98E-55 dispersed
Lcy13g0853 Lcy-Chr13:14800366 Lcy2g1574 Lcy-Chr2:21519745 5.52E-190 dispersed
Lcy7g1143 Lcy-Chr7:12911842 Lcy13g0853 Lcy-Chr13:14800366 5.55E-52 dispersed
Lcy13g0851 Lcy-Chr13:14756037 Lcy13g0853 Lcy-Chr13:14800366 3.80E-58 proximal
Lcy11g0308 Lcy-Chr11:5002133 Lcy13g0853 Lcy-Chr13:14800366 2.14E-259 transposed
Lcy11g0309 Lcy-Chr11:5014893 Lcy13g0853 Lcy-Chr13:14800366 7.40E-170 transposed
Lcy13g0711 Lcy-Chr13:10315239 Lcy13g0853 Lcy-Chr13:14800366 2.59E-27 transposed
Lcy6g1462 Lcy-Chr6:22415358 Lcy13g0853 Lcy-Chr13:14800366 0 transposed
Lcy8g1760 Lcy-Chr8:44086543 Lcy13g0853 Lcy-Chr13:14800366 1.94E-25 transposed
Lcy10g0760 Lcy-Chr10:22771113 Lcy13g0853 Lcy-Chr13:14800366 2.60E-10 wgd
Lcy11g1012 Lcy-Chr11:30935024 Lcy13g0853 Lcy-Chr13:14800366 1.94E-77 wgd
Lcy12g1040 Lcy-Chr12:17757666 Lcy13g0853 Lcy-Chr13:14800366 2.25E-38 wgd
Lcy12g0888 Lcy-Chr12:12704267 Lcy13g0853 Lcy-Chr13:14800366 3.16E-89 wgd
Lcy13g0853 Lcy-Chr13:14800366 Lcy2g1409 Lcy-Chr2:17051282 5.10E-09 wgd
Lcy13g0853 Lcy-Chr13:14800366 Lcy3g0620 Lcy-Chr3:23257453 2.61E-124 wgd
Lcy13g0853 Lcy-Chr13:14800366 Lcy4g1370 Lcy-Chr4:33287992 7.82E-16 wgd
Lcy13g0853 Lcy-Chr13:14800366 Lcy7g1275 Lcy-Chr7:16582371 8.37E-11 wgd
Lcy13g0853 Lcy-Chr13:14800366 Lcy9g0556 Lcy-Chr9:17629733 1.10E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19376 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0853 K02603 - csv:101214082 1095.88