Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0860 ATGGTTGTGATTTCAATCATCATCCTTTGGATTGTTAAATCAAGGAAGAAACAACAAAATGGAACTGTTGGTTCAAAGATGGTAGTGGATCAGTTAGCTGCCAATAACAATAACAACCAAATAAAAAGTGATCAGTTTTTGGAGACAAGGAGGCGGCAGTTCACATATTTAGAAGTGATGAAGATGACAAAGAATTTTGAGAGAATTCTGGGGAAAGGAGGTTTTGGGATGGTTTACTATGGAGTCATAGATGACATTCAAGTGGCTGTGAAGATGCTTTCTCAAGCTTCAGGTCAAGGTTATCAACAGTTTCAAGCAGAGGTTACTCTTCTTTTGAGAGTTCACCATAAAAACTTGACGAGTCTTGTGGGATATTTGAATGAAGGAGACCACCTTGGCCTCATTTATGAGTTCATGGCCAATGGAAACTTAGCTGAGCATCTCTCAGAGAAGAGTTCATGTTCACATGTCTTAAGTTGGCAAGATAGACTTCGAATAGCCATGGATGCAGCACAAGGATTGGAATATCTTCATGATGGTTGCAAGCCACCCATAATCCACAGAGATGTGAAAACAACAAACATCTTACTGACAGAGGATTTTCAAGCCAAACTTGCAGATTTTGGTTTGTCCAAAAGCTTCCCTATAGATACCAACAAAAGCAACAACTACATGTCCACCATTGTTGCTGGCACTCCTGGCTACCTTGATCCAGATTACTACATCTCGAACAGGCTGACGGAGAAAAGCGATGTATATAGCTTTGGAGTTACATTGTTGGAGATAATCAGCTGCAGACCTGTGATATCAAGATCAAGTGAAGAAAATGTTCATATTGGCAAATGGGTAAACTCGAAAGTGGGTCAAGGGGACATAAACGGAATAGTCGACGAAAGACTGAGAGGAAAATATGATGTGAACTCAGTTTGGAAGGCAGTGGAAATAGCAGTGAATTGTGTATCTGCGAACTCTGCAAAACGGCCGACGATGAACCAAGTGGTGGCGGAGCTGAAGAGTTGCTTGGCCATGGAACTGGAACGGACGCCGGAGAATAATCCAGGTCTCGATTCCACCAATTCTGTCAACATCATGTCCATCGTTATGGATTACAGTGGAGCCCTTCCAATGGCGAGATGA 1137 42.04 MVVISIIILWIVKSRKKQQNGTVGSKMVVDQLAANNNNNQIKSDQFLETRRRQFTYLEVMKMTKNFERILGKGGFGMVYYGVIDDIQVAVKMLSQASGQGYQQFQAEVTLLLRVHHKNLTSLVGYLNEGDHLGLIYEFMANGNLAEHLSEKSSCSHVLSWQDRLRIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTEDFQAKLADFGLSKSFPIDTNKSNNYMSTIVAGTPGYLDPDYYISNRLTEKSDVYSFGVTLLEIISCRPVISRSSEENVHIGKWVNSKVGQGDINGIVDERLRGKYDVNSVWKAVEIAVNCVSANSAKRPTMNQVVAELKSCLAMELERTPENNPGLDSTNSVNIMSIVMDYSGALPMAR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14932798 14935532 - Maker00026259 Lcy13g0860 651165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0860 378 CDD STKc_IRAK 70 338 - -
Lcy13g0860 378 Gene3D Phosphorylase Kinase; domain 1 51 138 - -
Lcy13g0860 378 PANTHER OS07G0107800 PROTEIN-RELATED 2 344 - -
Lcy13g0860 378 Pfam Protein tyrosine and serine/threonine kinase 66 337 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0860 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0860 378 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 139 349 - -
Lcy13g0860 378 ProSitePatterns Protein kinases ATP-binding region signature. 70 91 IPR017441 GO:0005524(InterPro)
Lcy13g0860 378 ProSiteProfiles Protein kinase domain profile. 64 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0860 378 SMART serkin_6 64 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0860 378 SUPERFAMILY Protein kinase-like (PK-like) 42 337 IPR011009 -
Lcy13g0860 378 Gene3D Transferase(Phosphotransferase) domain 1 139 360 - -
Lcy13g0860 378 FunFam Leucine-rich repeat receptor-like protein kinase 36 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0694 Lcy-Chr12:8679402 Lcy13g0860 Lcy-Chr13:14932798 4.29E-92 dispersed
Lcy13g0860 Lcy-Chr13:14932798 Lcy3g2172 Lcy-Chr3:48614006 7.74E-177 dispersed
Lcy13g0860 Lcy-Chr13:14932798 Lcy3g2182 Lcy-Chr3:48736201 7.75E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65563 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0860 - - - 0.0